3JBW
Cryo-electron microscopy structure of RAG Paired Complex (with NBD, no symmetry)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | V(D)J recombination-activating protein 1 | polymer | 764 | 87684.1 | 2 | UniProt (O13033) Pfam (PF00097) Pfam (PF12940) In PDB | Danio rerio (zebra fish) | RAG-1, Endonuclease RAG1, E3 ubiquitin-protein ligase RAG1 |
2 | B, D | V(D)J recombination-activating protein 2 | polymer | 533 | 59435.9 | 2 | UniProt (Q1RLW7) Pfam (PF03089) Pfam (PF13341) UniProt (by SIFTS) (O13034) In PDB | Danio rerio (zebra fish) | RAG-2 |
3 | E | 12-RSS signal end forward strand | polymer | 34 | 10439.8 | 1 | Homo sapiens | ||
4 | F | Nicked 12-RSS intermediate reverse strand | polymer | 50 | 15439.9 | 1 | Homo sapiens | ||
5 | G | Nicked 23-RSS intermediate reverse strand | polymer | 61 | 18870.1 | 1 | Homo sapiens | ||
6 | H | Nicked 23-RSS intermediate forward strand | polymer | 45 | 13806.9 | 1 | Homo sapiens | ||
7 | I, J | 5'-D(P*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*GP*TP*CP*TP*TP*A)-3' | polymer | 16 | 4880.2 | 2 | Homo sapiens | ||
8 | A, C | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
A, C: 271 - 1031 (UniProt: O13033)
B, D: 1 - 530 (UniProt: Q1RLW7)
PDB | External Database | Details |
---|---|---|
Gly 268 | - | expression tag |
Gly 269 | - | expression tag |
Ser 270 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 362557.0 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 130.8 | |
All* | Total formula weight | 362687.9 |