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3J9V

Yeast V-ATPase state 3

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(b)
V-type proton ATPase subunit a, vacuolar isoformpolymer84095625.51UniProt (P32563)
Pfam (PF01496)
Saccharomyces cerevisiae (yeast)V-ATPase a 1 subunit, V-ATPase 95 kDa subunit, Vacuolar pH protein 1, Vacuolar proton pump a subunit, Vacuolar proton translocating ATPase subunit a 1
2B
(O)
V-type proton ATPase subunit Cpolymer39244241.41UniProt (P31412)
Pfam (PF03223)
Saccharomyces cerevisiae (yeast)V-ATPase subunit C, V-ATPase 42 kDa subunit, Vacuolar proton pump subunit C
3C
(M)
V-type proton ATPase subunit Dpolymer25629235.01UniProt (P32610)
Pfam (PF01813)
Saccharomyces cerevisiae (yeast)V-ATPase subunit D, Vacuolar proton pump subunit D
4D
(N)
V-type proton ATPase subunit Fpolymer11813479.21UniProt (P39111)
Pfam (PF01990)
Saccharomyces cerevisiae (yeast)V-ATPase subunit F, V-ATPase 14 kDa subunit, Vacuolar proton pump subunit F
5E, G, I
(E, A, C)
V-type proton ATPase catalytic subunit Apolymer61667665.33UniProt (P17255)
Pfam (PF02874)
Pfam (PF16886)
Pfam (PF00006)
Pfam (PF22919)
Saccharomyces cerevisiae (yeast)V-ATPase subunit A, Vacuolar proton pump subunit A, Endonuclease PI-SceI, Sce VMA intein, VMA1-derived endonuclease, VDE
6F, H, J
(F, B, D)
V-type proton ATPase subunit Bpolymer51757815.03UniProt (P16140)
Pfam (PF02874)
Pfam (PF00006)
Pfam (PF22919)
Saccharomyces cerevisiae (yeast)V-ATPase subunit B, V-ATPase 57 kDa subunit, Vacuolar proton pump subunit B
7K
(Q)
V-type proton ATPase subunit dpolymer34539822.51UniProt (P32366)
Pfam (PF01992)
Saccharomyces cerevisiae (yeast)V-ATPase subunit d, V-ATPase 39 kDa subunit, V-ATPase subunit M39, Vacuolar proton pump subunit d
8L, N, Q
(J, L, H)
V-type proton ATPase subunit Gpolymer11412738.73UniProt (P48836)
Pfam (PF03179)
Saccharomyces cerevisiae (yeast)V-ATPase subunit G, V-ATPase 13 kDa subunit, Vacuolar proton pump subunit G
9M, O, R
(I, K, G)
V-type proton ATPase subunit Epolymer23326508.43UniProt (P22203)
Pfam (PF01991)
Saccharomyces cerevisiae (yeast)V-ATPase subunit E, V-ATPase 27 kDa subunit, Vacuolar proton pump subunit E
10P
(P)
V-type proton ATPase subunit Hpolymer47854482.61UniProt (P41807)
Pfam (PF03224)
Pfam (PF11698)
Saccharomyces cerevisiae (yeast)V-ATPase subunit H, V-ATPase 54 kDa subunit, Vacuolar proton pump subunit H
11AA, BA, S, T, U...
(R, U, X, Y, W...)
V-type proton ATPase subunit cpolymer16016357.510UniProt (P25515)
Pfam (PF00137)
Saccharomyces cerevisiae (yeast)V-ATPase subunit c, Guanine nucleotide exchange factor 2, V-ATPase 16 kDa proteolipid subunit 1, Vacuolar proton pump c subunit
Sequence modifications
E, A, C: 1 - 282 (UniProt: P17255)
E, A, C: 283 - 616 (UniProt: P17255)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains28
Total formula weight934643.4
All*Total formula weight934643.4
*Water molecules are not included.

246704

PDB entries from 2025-12-24

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