3J7O
Structure of the mammalian 60S ribosomal subunit
This is a non-PDB format compatible entry.
Replaces: 3J71Replaces: 1VWWReplaces: 1VWXEntity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (5) | 28S ribosomal RNA | polymer | 3664 | 1187230.0 | 1 | Sus scrofa (pig) | ||
| 2 | B (7) | 5S ribosomal RNA | polymer | 120 | 38691.9 | 1 | Sus scrofa (pig) | ||
| 3 | C (8) | 5.8S ribosomal RNA | polymer | 156 | 50143.6 | 1 | Sus scrofa (pig) | ||
| 4 | D (A) | Ribosomal protein uL2 | polymer | 257 | 28088.9 | 1 | UniProt (F2Z567) Pfam (PF00181) Pfam (PF03947) | Sus scrofa (pig) | |
| 5 | E (B) | Ribosomal protein uL3 | polymer | 394 | 44759.4 | 1 | Sus scrofa (pig) | ||
| 6 | F (C) | Ribosomal protein uL4 | polymer | 367 | 41635.1 | 1 | Sus scrofa (pig) | ||
| 7 | G (D) | Ribosomal protein uL18 | polymer | 297 | 34417.7 | 1 | UniProt (F1S530) Pfam (PF17144) Pfam (PF14204) UniProt (by SIFTS) (A0A8D0MVZ5) | Sus scrofa (pig) | |
| 8 | H (E) | Ribosomal protein eL6 | polymer | 236 | 27052.2 | 1 | Sus scrofa (pig) | ||
| 9 | I (F) | Ribosomal protein uL30 | polymer | 225 | 26590.7 | 1 | Sus scrofa (pig) | ||
| 10 | J (G) | Ribosomal protein eL8 | polymer | 266 | 30166.9 | 1 | UniProt (I3LVI8) | Sus scrofa (pig) | |
| 11 | K (H) | Ribosomal protein uL6 | polymer | 192 | 21899.5 | 1 | UniProt (I3LP78) Pfam (PF00347) | Sus scrofa (pig) | |
| 12 | L (I) | Ribosomal protein uL16 | polymer | 213 | 24465.8 | 1 | Pfam (PF00252) UniProt (by SIFTS) (Q29195) | Sus scrofa (pig) | |
| 13 | M (J) | Ribosomal protein uL5 | polymer | 178 | 20248.4 | 1 | UniProt (Q29205) Pfam (PF00673) Pfam (PF00281) | Sus scrofa (pig) | |
| 14 | N (L) | Ribosomal protein eL13 | polymer | 211 | 24365.8 | 1 | UniProt (I3LSD3) Pfam (PF01294) | Sus scrofa (pig) | |
| 15 | O (M) | Ribosomal protein eL14 | polymer | 213 | 23383.1 | 1 | UniProt (A1XQU3) Pfam (PF01929) | Sus scrofa (pig) | |
| 16 | P (N) | Ribosomal protein eL15 | polymer | 204 | 24207.3 | 1 | UniProt (I3LK33) | Sus scrofa (pig) | |
| 17 | Q (O) | Ribosomal protein uL13 | polymer | 204 | 23765.5 | 1 | UniProt (F1RI01) | Sus scrofa (pig) | |
| 18 | R (P) | Ribosomal protein uL22 | polymer | 153 | 17757.6 | 1 | Sus scrofa (pig) | ||
| 19 | S (Q) | Ribosomal protein eL18 | polymer | 188 | 21588.6 | 1 | UniProt (I3L6F1) Pfam (PF17135) UniProt (by SIFTS) (Q95342) | Sus scrofa (pig) | |
| 20 | T (R) | Ribosomal protein eL19 | polymer | 196 | 23567.3 | 1 | UniProt (F2Z546) Pfam (PF01280) Pfam (PF25476) | Sus scrofa (pig) | |
| 21 | U (S) | Ribosomal protein eL20 | polymer | 224 | 26103.4 | 1 | UniProt (F1S935) Pfam (PF01775) UniProt (by SIFTS) (A0A4X1UAP0) | Sus scrofa (pig) | |
| 22 | V (T) | Ribosomal protein eL21 | polymer | 160 | 18610.0 | 1 | UniProt (F1RTJ9) Pfam (PF01157) UniProt (by SIFTS) (P49666) | Sus scrofa (pig) | |
| 23 | W (U) | Ribosomal protein eL22 | polymer | 128 | 14785.0 | 1 | UniProt (P67985) Pfam (PF01776) | Sus scrofa (pig) | |
| 24 | X (V) | Ribosomal protein uL14 | polymer | 140 | 14892.5 | 1 | UniProt (P62831) Pfam (PF00238) | Sus scrofa (pig) | |
| 25 | Y (W) | Ribosomal protein eL24 | polymer | 157 | 17825.1 | 1 | Sus scrofa (pig) | ||
| 26 | Z (X) | Ribosomal protein uL23 | polymer | 156 | 17740.2 | 1 | UniProt (F2Z522) Pfam (PF00276) | Sus scrofa (pig) | |
| 27 | AA (Y) | Ribosomal protein uL24 | polymer | 145 | 17303.4 | 1 | UniProt (I3L7Y1) Pfam (PF16906) Pfam (PF00467) | Sus scrofa (pig) | |
| 28 | BA (Z) | Ribosomal protein eL27 | polymer | 136 | 15835.8 | 1 | UniProt (A1XQU5) Pfam (PF00467) Pfam (PF01777) | Sus scrofa (pig) | |
| 29 | CA (a) | Ribosomal protein uL15 | polymer | 148 | 16631.5 | 1 | UniProt (F1RGC0) Pfam (PF00828) | Sus scrofa (pig) | |
| 30 | DA (b) | Ribosomal protein eL29 | polymer | 160 | 17545.8 | 1 | UniProt (Q95281) Pfam (PF01779) | Sus scrofa (pig) | |
| 31 | EA (c) | Ribosomal protein eL30 | polymer | 115 | 12805.1 | 1 | UniProt (F2Z554) Pfam (PF01248) | Sus scrofa (pig) | |
| 32 | FA (d) | Ribosomal protein eL31 | polymer | 125 | 14494.9 | 1 | UniProt (P62901) Pfam (PF01198) | Sus scrofa (pig) | |
| 33 | GA (e) | Ribosomal protein eL32 | polymer | 135 | 15898.9 | 1 | UniProt (Q6QAT0) Pfam (PF01655) | Sus scrofa (pig) | |
| 34 | HA (f) | Ribosomal protein eL33 | polymer | 110 | 12564.7 | 1 | UniProt (F2Z5Q8) | Sus scrofa (pig) | |
| 35 | IA (g) | Ribosomal protein eL34 | polymer | 117 | 13326.1 | 1 | UniProt (F2Z5B9) Pfam (PF01199) UniProt (by SIFTS) (Q29223) | Sus scrofa (pig) | |
| 36 | JA (h) | Ribosomal protein uL29 | polymer | 123 | 14591.6 | 1 | UniProt (Q29361) Pfam (PF00831) | Sus scrofa (pig) | |
| 37 | KA (i) | Ribosomal protein eL36 | polymer | 105 | 12290.9 | 1 | UniProt (F2Z5K6) | Sus scrofa (pig) | |
| 38 | LA (j) | Ribosomal protein eL37 | polymer | 86 | 10102.9 | 1 | Sus scrofa (pig) | ||
| 39 | MA (k) | Ribosomal protein eL38 | polymer | 70 | 8238.9 | 1 | UniProt (F2Z568) UniProt (by SIFTS) (A0A4X1VLH7) | Sus scrofa (pig) | |
| 40 | NA (l) | Ribosomal protein eL39 | polymer | 51 | 6426.8 | 1 | UniProt (K7GP63) Pfam (PF00832) | Sus scrofa (pig) | |
| 41 | OA (m) | Ribosomal protein eL40 | polymer | 128 | 14758.4 | 1 | UniProt (P63053) Pfam (PF00240) Pfam (PF01020) | Sus scrofa (pig) | |
| 42 | PA (n) | Ribosomal protein eL41 | polymer | 25 | 3473.5 | 1 | Sus scrofa (pig) | ||
| 43 | QA (o) | Ribosomal protein eL42 | polymer | 106 | 12477.0 | 1 | UniProt (P83884) Pfam (PF00935) | Sus scrofa (pig) | |
| 44 | RA (p) | Ribosomal protein eL43 | polymer | 91 | 10168.2 | 1 | Sus scrofa (pig) | ||
| 45 | SA (r) | Ribosomal protein eL28 | polymer | 125 | 14301.8 | 1 | Sus scrofa (pig) | ||
| 46 | AB, AC, AD, AE, AF... (5, 7, 8, P, V) | MAGNESIUM ION | non-polymer | 24.3 | 130 | Chemie (MG) | |||
| 47 | TF, UF, VF (j, m, o) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 45 |
| Total formula weight | 2087217.6 | |
| Non-Polymers* | Number of molecules | 133 |
| Total formula weight | 3355.9 | |
| All* | Total formula weight | 2090573.5 |
