3J6Y
S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 2S | 25S ribosomal RNA | polymer | 3395 | 1097148.6 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 2 | 8S | 5.8S ribosomal RNA | polymer | 158 | 50682.9 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 3 | 5S | 5S ribosomal RNA | polymer | 121 | 38951.1 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 4 | L1 | 60S ribosomal protein L1 | polymer | 217 | 24524.8 | 1 | UniProt (P0CX43) Pfam (PF00687) In PDB | Saccharomyces cerevisiae (yeast) | L10a |
| 5 | L2 | 60S ribosomal protein L2 | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) In PDB | Saccharomyces cerevisiae (yeast) | L5, RP8, YL6 |
| 6 | L3 | 60S ribosomal protein L3 | polymer | 387 | 43850.8 | 1 | UniProt (P14126) Pfam (PF00297) In PDB | Saccharomyces cerevisiae (yeast) | Maintenance of killer protein 8, RP1, Trichodermin resistance protein, YL1 |
| 7 | L4 | 60S ribosomal protein L4 | polymer | 362 | 39159.1 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) In PDB | Saccharomyces cerevisiae (yeast) | L2, RP2, YL2 |
| 8 | L5 | 60S ribosomal protein L5 | polymer | 297 | 33764.8 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) In PDB | Saccharomyces cerevisiae (yeast) | L1, L1a, Ribosomal 5S RNA-binding protein, YL3 |
| 9 | L6 | 60S ribosomal protein L6 | polymer | 176 | 20000.6 | 1 | UniProt (Q02326) Pfam (PF01159) In PDB | Saccharomyces cerevisiae (yeast) | L17, RP18, YL16 |
| 10 | L7 | 60S ribosomal protein L7 | polymer | 244 | 27686.3 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) In PDB | Saccharomyces cerevisiae (yeast) | L6, RP11, YL8 |
| 11 | L8 | 60S ribosomal protein L8 | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) In PDB | Saccharomyces cerevisiae (yeast) | L4, L4-2, L7a-1, Maintenance of killer protein 7, RP6, YL5 |
| 12 | L9 | 60S ribosomal protein L9 | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) In PDB | Saccharomyces cerevisiae (yeast) | L8, RP24, YL11 |
| 13 | 50 | 60S ribosomal protein L10 | polymer | 221 | 25410.5 | 1 | UniProt (P41805) Pfam (PF00252) In PDB | Saccharomyces cerevisiae (yeast) | L9, Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein |
| 14 | 51 | 60S ribosomal protein L11 | polymer | 174 | 19755.7 | 1 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) In PDB | Saccharomyces cerevisiae (yeast) | L16, RP39, YL22 |
| 15 | 53 | 60S ribosomal protein L13 | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) Pfam (PF01294) In PDB | Saccharomyces cerevisiae (yeast) | |
| 16 | 54 | 60S ribosomal protein L14 | polymer | 138 | 15195.1 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) In PDB | Saccharomyces cerevisiae (yeast) | |
| 17 | 55 | 60S ribosomal protein L15 | polymer | 204 | 24482.4 | 1 | UniProt (P05748) Pfam (PF00827) In PDB | Saccharomyces cerevisiae (yeast) | L13, RP15R, YL10, YP18 |
| 18 | 56 | 60S ribosomal protein L16 | polymer | 199 | 22247.2 | 1 | UniProt (P26784) Pfam (PF00572) In PDB | Saccharomyces cerevisiae (yeast) | L13a, L21, RP22, YL15 |
| 19 | 57 | 60S ribosomal protein L17 | polymer | 184 | 20589.5 | 1 | UniProt (P05740) Pfam (PF00237) In PDB | Saccharomyces cerevisiae (yeast) | L20A, YL17 |
| 20 | 58 | 60S ribosomal protein L18 | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) Pfam (PF17135) In PDB | Saccharomyces cerevisiae (yeast) | RP28 |
| 21 | 59 | 60S ribosomal protein L19 | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) Pfam (PF01280) In PDB | Saccharomyces cerevisiae (yeast) | L23, RP15L, RP33, YL14 |
| 22 | 60 | 60S ribosomal protein L20 | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) Pfam (PF01775) In PDB | Saccharomyces cerevisiae (yeast) | L18a |
| 23 | 61 | 60S ribosomal protein L21 | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) Pfam (PF01157) In PDB | Saccharomyces cerevisiae (yeast) | |
| 24 | 62 | 60S ribosomal protein L22 | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) In PDB | Saccharomyces cerevisiae (yeast) | L1c, RP4, YL31 |
| 25 | 63 | 60S ribosomal protein L23 | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) Pfam (PF00238) In PDB | Saccharomyces cerevisiae (yeast) | L17a, YL32 |
| 26 | 64 | 60S ribosomal protein L24 | polymer | 155 | 17661.7 | 1 | UniProt (P04449) Pfam (PF01246) In PDB | Saccharomyces cerevisiae (yeast) | L30, RP29, YL21 |
| 27 | 65 | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) In PDB | Saccharomyces cerevisiae (yeast) | RP16L, YL25, YP42' |
| 28 | 66 | 60S ribosomal protein L26 | polymer | 127 | 14265.8 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) In PDB | Saccharomyces cerevisiae (yeast) | L33, YL33 |
| 29 | 67 | 60S ribosomal protein L27 | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) In PDB | Saccharomyces cerevisiae (yeast) | |
| 30 | 68 | 60S ribosomal protein L28 | polymer | 149 | 16761.7 | 1 | UniProt (P02406) Pfam (PF00828) In PDB | Saccharomyces cerevisiae (yeast) | L27a, L29, RP44, RP62, YL24 |
| 31 | 69 | 60S ribosomal protein L29 | polymer | 59 | 6691.9 | 1 | UniProt (P05747) Pfam (PF01779) In PDB | Saccharomyces cerevisiae (yeast) | YL43 |
| 32 | 70 | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) In PDB | Saccharomyces cerevisiae (yeast) | L32, RP73, YL38 |
| 33 | 71 | 60S ribosomal protein L31 | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) Pfam (PF01198) In PDB | Saccharomyces cerevisiae (yeast) | L34, YL28 |
| 34 | 72 | 60S ribosomal protein L32 | polymer | 130 | 14809.4 | 1 | UniProt (P38061) Pfam (PF01655) In PDB | Saccharomyces cerevisiae (yeast) | |
| 35 | 73 | 60S ribosomal protein L33 | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) In PDB | Saccharomyces cerevisiae (yeast) | L37, RP47, YL37 |
| 36 | 74 | 60S ribosomal protein L34 | polymer | 121 | 13673.2 | 1 | UniProt (P87262) Pfam (PF01199) In PDB | Saccharomyces cerevisiae (yeast) | |
| 37 | 75 | 60S ribosomal protein L35 | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) Pfam (PF00831) In PDB | Saccharomyces cerevisiae (yeast) | |
| 38 | 76 | 60S ribosomal protein L36 | polymer | 100 | 11151.3 | 1 | UniProt (P05745) Pfam (PF01158) In PDB | Saccharomyces cerevisiae (yeast) | L39, YL39 |
| 39 | 77 | 60S ribosomal protein L37 | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) In PDB | Saccharomyces cerevisiae (yeast) | L43, YL35, YP55 |
| 40 | 78 | 60S ribosomal protein L38 | polymer | 78 | 8845.6 | 1 | UniProt (P49167) Pfam (PF01781) In PDB | Saccharomyces cerevisiae (yeast) | |
| 41 | 79 | 60S ribosomal protein L39 | polymer | 51 | 6358.6 | 1 | UniProt (P04650) Pfam (PF00832) In PDB | Saccharomyces cerevisiae (yeast) | L46, YL40 |
| 42 | 80 | 60S ribosomal protein L40 | polymer | 128 | 14583.1 | 1 | UniProt (P0CH08) Pfam (PF00240) Pfam (PF01020) In PDB | Saccharomyces cerevisiae (yeast) | CEP52 |
| 43 | 81 | 60S ribosomal protein L41 | polymer | 25 | 3354.2 | 1 | UniProt (P0CX86) Pfam (PF05162) In PDB | Saccharomyces cerevisiae (yeast) | L47, YL41 |
| 44 | 82 | 60S ribosomal protein L42 | polymer | 106 | 12246.7 | 1 | UniProt (P0CX27) Pfam (PF00935) In PDB | Saccharomyces cerevisiae (yeast) | L41, YL27, YP44 |
| 45 | 83 | 60S ribosomal protein L43 | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) Pfam (PF01780) In PDB | Saccharomyces cerevisiae (yeast) | L37a, YL35 |
| 46 | 1S | 18S ribosomal RNA | polymer | 1798 | 579126.6 | 1 | Saccharomyces cerevisiae (yeast) | ||
| 47 | S0 | 40S ribosomal protein S0 | polymer | 252 | 28051.3 | 1 | UniProt (P32905) Pfam (PF00318) In PDB | Saccharomyces cerevisiae (yeast) | Nucleic acid-binding protein NAB1A |
| 48 | S1 | 40S ribosomal protein S1 | polymer | 255 | 28798.5 | 1 | UniProt (P33442) Pfam (PF01015) In PDB | Saccharomyces cerevisiae (yeast) | RP10A |
| 49 | S2 | 40S ribosomal protein S2 | polymer | 254 | 27490.8 | 1 | UniProt (P25443) Pfam (PF00333) Pfam (PF03719) In PDB | Saccharomyces cerevisiae (yeast) | Omnipotent suppressor protein SUP44, RP12, S4, YS5 |
| 50 | S3 | 40S ribosomal protein S3 | polymer | 240 | 26542.8 | 1 | UniProt (P05750) Pfam (PF07650) Pfam (PF00189) In PDB | Saccharomyces cerevisiae (yeast) | RP13, YS3 |
| 51 | S4 | 40S ribosomal protein S4 | polymer | 261 | 29469.3 | 1 | UniProt (P0CX35) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Saccharomyces cerevisiae (yeast) | RP5, S7, YS6 |
| 52 | S5 | 40S ribosomal protein S5 | polymer | 225 | 25072.6 | 1 | UniProt (P26783) Pfam (PF00177) In PDB | Saccharomyces cerevisiae (yeast) | RP14, S2, YS8 |
| 53 | S6 | 40S ribosomal protein S6 | polymer | 236 | 27054.5 | 1 | UniProt (P0CX37) Pfam (PF01092) In PDB | Saccharomyces cerevisiae (yeast) | RP9, S10, YS4 |
| 54 | S7 | 40S ribosomal protein S7 | polymer | 190 | 21658.2 | 1 | UniProt (P26786) Pfam (PF01251) In PDB | Saccharomyces cerevisiae (yeast) | RP30, RP40 |
| 55 | S8 | 40S ribosomal protein S8 | polymer | 200 | 22537.8 | 1 | UniProt (P0CX39) Pfam (PF01201) In PDB | Saccharomyces cerevisiae (yeast) | RP19, S14, YS9 |
| 56 | S9 | 40S ribosomal protein S9 | polymer | 197 | 22487.9 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) In PDB | Saccharomyces cerevisiae (yeast) | RP21, S13, YP28, YS11 |
| 57 | 10 | 40S ribosomal protein S10 | polymer | 105 | 12757.4 | 1 | UniProt (Q08745) Pfam (PF03501) In PDB | Saccharomyces cerevisiae (yeast) | |
| 58 | 11 | 40S ribosomal protein S11 | polymer | 156 | 17785.9 | 1 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) In PDB | Saccharomyces cerevisiae (yeast) | RP41, S18, YS12 |
| 59 | 12 | 40S ribosomal protein S12 | polymer | 143 | 15488.6 | 1 | UniProt (P48589) Pfam (PF01248) In PDB | Saccharomyces cerevisiae (yeast) | |
| 60 | 13 | 40S ribosomal protein S13 | polymer | 151 | 17059.9 | 1 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) In PDB | Saccharomyces cerevisiae (yeast) | S27a, YS15 |
| 61 | 14 | 40S ribosomal protein S14 | polymer | 137 | 14562.7 | 1 | UniProt (P06367) Pfam (PF00411) In PDB | Saccharomyces cerevisiae (yeast) | RP59A |
| 62 | 15 | 40S ribosomal protein S15 | polymer | 142 | 16031.9 | 1 | UniProt (Q01855) Pfam (PF00203) In PDB | Saccharomyces cerevisiae (yeast) | RIG protein, RP52, S21, YS21 |
| 63 | 16 | 40S ribosomal protein S16 | polymer | 143 | 15877.5 | 1 | UniProt (P0CX51) Pfam (PF00380) In PDB | Saccharomyces cerevisiae (yeast) | RP61R |
| 64 | 17 | 40S ribosomal protein S17 | polymer | 136 | 15820.4 | 1 | UniProt (P02407) Pfam (PF00833) In PDB | Saccharomyces cerevisiae (yeast) | RP51A |
| 65 | 18 | 40S ribosomal protein S18 | polymer | 146 | 17071.6 | 1 | UniProt (P0CX55) Pfam (PF00416) In PDB | Saccharomyces cerevisiae (yeast) | |
| 66 | 19 | 40S ribosomal protein S19 | polymer | 144 | 15942.1 | 1 | UniProt (P07280) Pfam (PF01090) In PDB | Saccharomyces cerevisiae (yeast) | RP55A, S16a, YP45, YS16A |
| 67 | 20 | 40S ribosomal protein S20 | polymer | 121 | 13929.0 | 1 | UniProt (P38701) Pfam (PF00338) In PDB | Saccharomyces cerevisiae (yeast) | |
| 68 | 21 | 40S ribosomal protein S21 | polymer | 87 | 9758.8 | 1 | UniProt (P0C0V8) Pfam (PF01249) In PDB | Saccharomyces cerevisiae (yeast) | S26, YS25 |
| 69 | 22 | 40S ribosomal protein S22 | polymer | 130 | 14650.1 | 1 | UniProt (P0C0W1) Pfam (PF00410) In PDB | Saccharomyces cerevisiae (yeast) | RP50, S24, YP58, YS22 |
| 70 | 23 | 40S ribosomal protein S23 | polymer | 145 | 16073.9 | 1 | UniProt (P0CX29) Pfam (PF00164) In PDB | Saccharomyces cerevisiae (yeast) | RP37, S28, YS14 |
| 71 | 24 | 40S ribosomal protein S24 | polymer | 135 | 15362.8 | 1 | UniProt (P0CX31) Pfam (PF01282) In PDB | Saccharomyces cerevisiae (yeast) | RP50 |
| 72 | 25 | 40S ribosomal protein S25 | polymer | 108 | 12067.3 | 1 | UniProt (Q3E792) Pfam (PF03297) In PDB | Saccharomyces cerevisiae (yeast) | RP45, S31, YS23 |
| 73 | 26 | 40S ribosomal protein S26 | polymer | 119 | 13538.9 | 1 | UniProt (P39938) Pfam (PF01283) In PDB | Saccharomyces cerevisiae (yeast) | |
| 74 | 27 | 40S ribosomal protein S27 | polymer | 82 | 8893.4 | 1 | UniProt (P35997) Pfam (PF01667) In PDB | Saccharomyces cerevisiae (yeast) | RP61, YS20 |
| 75 | 28 | 40S ribosomal protein S28 | polymer | 67 | 7605.8 | 1 | UniProt (Q3E7X9) Pfam (PF01200) In PDB | Saccharomyces cerevisiae (yeast) | S33, YS27 |
| 76 | 29 | 40S ribosomal protein S29 | polymer | 56 | 6675.7 | 1 | UniProt (P41057) Pfam (PF00253) In PDB | Saccharomyces cerevisiae (yeast) | S36, YS29 |
| 77 | 30 | 40S ribosomal protein S30 | polymer | 63 | 7137.5 | 1 | UniProt (P0CX33) Pfam (PF04758) In PDB | Saccharomyces cerevisiae (yeast) | |
| 78 | 31 | 40S ribosomal protein S31 | polymer | 152 | 17254.2 | 1 | UniProt (P05759) Pfam (PF00240) Pfam (PF01599) In PDB | Saccharomyces cerevisiae (yeast) | 40S ribosomal protein S31, CEP76, S37, YS24 |
| 79 | RA | Guanine nucleotide-binding protein subunit beta-like protein | polymer | 319 | 34841.2 | 1 | UniProt (P38011) Pfam (PF00400) In PDB | Saccharomyces cerevisiae (yeast) | Receptor for activated C kinase, Receptor of activated protein kinase C 1, RACK1 |
| 80 | IR | TSV IRES mRNA | polymer | 201 | 64644.3 | 1 | Taura syndrome virus |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 80 |
| Total formula weight | 3194034.3 | |
| All* | Total formula weight | 3194034.3 |
