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3ITA

Crystal structure of Penicillin-Binding Protein 6 (PBP6) from E. coli in acyl-enzyme complex with ampicillin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
D-alanyl-D-alanine carboxypeptidase dacCpolymer35238091.34UniProt (P08506)
Pfam (PF00768)
Pfam (PF07943)
Escherichia coliDD-carboxypeptidase, DD-peptidase, Penicillin-binding protein 6, PBP-6
2E
(A)
(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acidnon-polymer351.41Chemie (AIX)
3F, G, H, I, J...
(A, B, C)
SULFATE IONnon-polymer96.16Chemie (SO4)
4L
(D)
(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACIDnon-polymer349.41Chemie (AIC)
5M, N, O, P
(A, B, C, D)
waterwater18.0774Chemie (HOH)
Sequence modifications
A, B, C, D: 2 - 352 (UniProt: P08506)
PDBExternal DatabaseDetails
Met 1-initiating methionine
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight152365.2
Non-Polymers*Number of molecules8
Total formula weight1277.2
All*Total formula weight153642.4
*Water molecules are not included.

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PDB entries from 2026-01-28

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