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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

3I55

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1023S ribosomal RNApolymer2923946463.51GenBank (AY596297.1)Haloarcula marismortui ATCC 43049
2A50S ribosomal protein L2Ppolymer24025354.71UniProt (P20276)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal2, Hl4
3B50S ribosomal protein L3Ppolymer33837396.41UniProt (P20279)
Pfam (PF00297)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal3, Hl1
4C50S ribosomal protein L4Ppolymer24626457.11UniProt (P12735)
Pfam (PF00573)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal4, Hl6
5D50S ribosomal protein L5Ppolymer17719551.71UniProt (P14124)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal5, Hl13
6E50S ribosomal protein L6Ppolymer17819961.71UniProt (P14135)
Pfam (PF00347)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal6, Hl10
7F50S ribosomal protein L7Aepolymer12012791.91UniProt (P12743)
Pfam (PF01248)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hs6
8G50S ribosomal protein L10Epolymer34837169.81UniProt (P15825)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Ribosomal protein L10, Acidic ribosomal protein P0 homolog, L10E, HMal10
9H50S ribosomal protein L10epolymer17419645.31UniProt (P60617)
Pfam (PF00252)
In PDB		Haloarcula marismortui (Halobacterium marismortui)
10I50S ribosomal protein L11Ppolymer16217097.51UniProt (P14122)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal11
11J50S ribosomal protein L13Ppolymer14516249.21UniProt (P29198)
Pfam (PF00572)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal13
12K50S ribosomal protein L14Ppolymer13214216.21UniProt (P22450)
Pfam (PF00238)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal14, Hl27
13L50S ribosomal protein L15Ppolymer16518005.41UniProt (P12737)
Pfam (PF00828)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal15, Hl9
14M50S ribosomal protein L15epolymer19422143.91UniProt (P60618)
Pfam (PF00827)
In PDB		Haloarcula marismortui (Halobacterium marismortui)50S ribosomal protein LC12
15N50S ribosomal protein L18Ppolymer18720640.91UniProt (P14123)
Pfam (PF17144)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal18, Hl12
16O50S ribosomal protein L18epolymer11612438.91UniProt (P12733)
Pfam (PF00828)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hl29, L19
17P50S ribosomal protein L19epolymer14916796.51UniProt (P14119)
Pfam (PF01280)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal19, Hl24
18Q50S ribosomal protein L21epolymer9610567.81UniProt (P12734)
Pfam (PF01157)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hl31
19R50S ribosomal protein L22Ppolymer15516966.91UniProt (P10970)
Pfam (PF00237)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal22, Hl23
20S50S ribosomal protein L23Ppolymer859612.51UniProt (P12732)
Pfam (PF00276)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal23, Hl25, L21
21T50S ribosomal protein L24Ppolymer12013671.01UniProt (P10972)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal24, Hl16, Hl15
22U50S ribosomal protein L24epolymer667233.71UniProt (P14116)
Pfam (PF01246)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hl21/Hl22
23V50S ribosomal protein L29Ppolymer717889.91UniProt (P10971)
Pfam (PF00831)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal29, Hl33
24W50S ribosomal protein L30Ppolymer15417062.91UniProt (P14121)
Pfam (PF00327)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hmal30, Hl20, Hl16
25X50S ribosomal protein L31epolymer9210384.61UniProt (P18138)
Pfam (PF01198)
In PDB		Haloarcula marismortui (Halobacterium marismortui)L34, Hl30
26Y50S ribosomal protein L32epolymer24126455.71UniProt (P12736)
Pfam (PF14520)
Pfam (PF01655)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hl5
27Z50S ribosomal protein L37Aepolymer11612900.31UniProt (P60619)
Pfam (PF01780)
In PDB		Haloarcula marismortui (Halobacterium marismortui)
28150S ribosomal protein L37epolymer576330.21UniProt (P32410)
Pfam (PF01907)
In PDB		Haloarcula marismortui (Halobacterium marismortui)L35e
29250S ribosomal protein L39epolymer506133.11UniProt (P22452)
Pfam (PF00832)
In PDB		Haloarcula marismortui (Halobacterium marismortui)Hl39e, Hl46e
30350S ribosomal protein L44Epolymer9210815.21UniProt (P32411)
Pfam (PF00935)
In PDB		Haloarcula marismortui (Halobacterium marismortui)La, Hla
3195S ribosomal RNApolymer12239303.41GenBank (AF034620.1)Haloarcula marismortui
324DNA/RNA (5'-R(*CP*CP*(5AA)P*(2OP)P*(PO2)P*AP*CP*C)-3')polymer81962.31
330, B, T, Y, 2...MAGNESIUM IONnon-polymer24.393Chemie (MG)
340POTASSIUM IONnon-polymer39.12Chemie (K)
350, R, B, S, C...SODIUM IONnon-polymer23.075Chemie (NA)
360, A, R, B, Y...CHLORIDE IONnon-polymer35.522Chemie (CL)
370, A, R, S, B...STRONTIUM IONnon-polymer87.6108Chemie (SR)
380Mycalamide Anon-polymer503.61Chemie (MYL)
39U, Z, 1, 3, OCADMIUM IONnon-polymer112.45Chemie (CD)
40waterwater18.07823Chemie (HOH)
Sequence modifications
Z: 25 - 116 (UniProt: P60619)
PDBExternal DatabaseDetails
Met 1-expression tag
Ser 2-expression tag
Pro 3-expression tag
Arg 4-expression tag
Ala 5-expression tag
Arg 6-expression tag
Arg 7-expression tag
Glu 8-expression tag
Pro 9-expression tag
Asn 10-expression tag
Leu 11-expression tag
Glu 12-expression tag
Gly 13-expression tag
Leu 14-expression tag
Met 15-expression tag
Trp 16-expression tag
Pro 17-expression tag
Leu 18-expression tag
Gly 19-expression tag
Gly 20-expression tag
Gln 21-expression tag
Gln 22-expression tag
Thr 23-expression tag
Thr 24-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains32
Total formula weight1479670.4
Non-Polymers*Number of molecules306
Total formula weight15371.4
All*Total formula weight1495041.8
*Water molecules are not included.

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PDB entries from 2024-07-17

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