3FSY
Structure of tetrahydrodipicolinate N-succinyltransferase (Rv1201c;DapD) in complex with succinyl-CoA from Mycobacterium tuberculosis
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Tetrahydrodipicolinate N-succinyltransferase | polymer | 332 | 34384.7 | 5 | UniProt (O05302) Pfam (PF14789) Pfam (PF14602) UniProt (by SIFTS) (P9WP21) | Mycobacterium tuberculosis | Tetrahydrodipicolinate N-succinyltransferase |
| 2 | F, H, N, Y (A, B, E) | SUCCINYL-COENZYME A | non-polymer | 867.6 | 4 | Chemie (SCA) | |||
| 3 | G, P, U (A, B, D) | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 3 | Chemie (MPD) | |||
| 4 | AA, BA, I, J, K... (E, A, B, D) | MAGNESIUM ION | non-polymer | 24.3 | 10 | Chemie (MG) | |||
| 5 | CA, M, R, X (E, A, B, D) | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) | |||
| 6 | O, S, T (B, C, D) | ACETIC ACID | non-polymer | 60.1 | 3 | Chemie (ACY) | |||
| 7 | DA, EA, FA, GA, HA (A, B, C, D, E) | water | water | 18.0 | 737 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 2 - 317 (UniProt: O05302)
| PDB | External Database | Details |
|---|---|---|
| Met -1 | - | expression tag |
| Ala 0 | - | expression tag |
| Val 1 | - | expression tag |
| Gly 318 | - | expression tag |
| Val 319 | - | expression tag |
| Pro 320 | - | expression tag |
| Arg 321 | - | expression tag |
| Gly 322 | - | expression tag |
| Leu 323 | - | expression tag |
| Glu 324 | - | expression tag |
| His 325 | - | expression tag |
| His 326 | - | expression tag |
| His 327 | - | expression tag |
| His 328 | - | expression tag |
| His 329 | - | expression tag |
| His 330 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 171923.6 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 4340.1 | |
| All* | Total formula weight | 176263.7 |
