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3F06

Crystal Structure Analysis of Human HDAC8 D101A Variant.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Histone deacetylase 8polymer38843130.92UniProt (Q9BY41)
Pfam (PF00850)
Homo sapiens (Human)HD8
2C, H
(A, B)
ZINC IONnon-polymer65.42Chemie (ZN)
3D, E, I, J
(A, B)
POTASSIUM IONnon-polymer39.14Chemie (K)
4F, K
(A, B)
4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamidenon-polymer307.42Chemie (B3N)
5G, L
(A, B)
BETA-MERCAPTOETHANOLnon-polymer78.12Chemie (BME)
6M, N
(A, B)
waterwater18.030Chemie (HOH)
Sequence modifications
A, B: 1 - 377 (UniProt: Q9BY41)
PDBExternal DatabaseDetails
Ala 101Asp 101engineered mutation
Ile 378-expression tag
Glu 379-expression tag
Gly 380-expression tag
Arg 381-expression tag
Ser 382-expression tag
His 383-expression tag
His 384-expression tag
His 385-expression tag
His 386-expression tag
His 387-expression tag
His 388-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight86261.9
Non-Polymers*Number of molecules10
Total formula weight1058.3
All*Total formula weight87320.1
*Water molecules are not included.

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PDB entries from 2025-07-02

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