3DXU
The crystal structure of core JMJD2D complexed with FE and N-oxalylglycine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | JmjC domain-containing histone demethylation protein 3D | polymer | 337 | 38698.7 | 1 | UniProt (Q6B0I6) Pfam (PF02375) Pfam (PF02373) | Homo sapiens (Human) | Jumonji domain-containing protein 2D |
| 2 | B (A) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 3 | C (A) | FE (II) ION | non-polymer | 55.8 | 1 | Chemie (FE2) | |||
| 4 | D, E, F (A) | SULFATE ION | non-polymer | 96.1 | 3 | Chemie (SO4) | |||
| 5 | G (A) | N-OXALYLGLYCINE | non-polymer | 147.1 | 1 | Chemie (OGA) | |||
| 6 | H, I, J (A) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 7 | K (A) | water | water | 18.0 | 365 | Chemie (HOH) |
Sequence modifications
A: 11 - 341 (UniProt: Q6B0I6)
| PDB | External Database | Details |
|---|---|---|
| Gly 8 | - | expression tag |
| Ser 9 | - | expression tag |
| Thr 10 | - | expression tag |
| Gly 342 | - | expression tag |
| Ser 343 | - | expression tag |
| Thr 344 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 38698.7 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 832.8 | |
| All* | Total formula weight | 39531.5 |
