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3DXU

The crystal structure of core JMJD2D complexed with FE and N-oxalylglycine

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 350
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE2 A 360
ChainResidue
AHIS192
AGLU194
AHIS280
AOGA370
AHOH646

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 391
ChainResidue
APRO113
ALYS124
AASN128
ATRP185
ALYS186
AHOH521

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 392
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH535
AHOH579
AHOH711
AHOH752

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 393
ChainResidue
AARG123
ALYS124
ALYS127
AASN128

site_idAC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE OGA A 370
ChainResidue
ATYR181
APHE189
AHIS192
AGLU194
ASER200
AASN202
ALYS210
AHIS280
AALA292
AFE2360
AHOH485
AHOH646

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 381
ChainResidue
ACYS168
ALEU230
APHE231
ALEU328
AHOH456
AHOH735

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 382
ChainResidue
APHE31
ALYS150
ATRP152
AASN153
AHIS156
AHOH492

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 383
ChainResidue
ATYR181
AGLU194
AALA292
AASN294
AHOH646
AHOH664
AHOH694

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
AASP139
AHIS205
ATYR213
ALEU248

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AASP195
AASP197
APHE283

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
APHE241
AALA247
AGLY313
AALA315

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AASN29
AASP30

223790

PDB entries from 2024-08-14

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