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3DX3

Golgi alpha-Mannosidase II in complex with Mannostatin analog (1R,2R,3S,4R,5R)-5-aminocyclopentane-1,2,3,4-tetraol

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Alpha-mannosidase 2polymer1045119701.61UniProt (Q24451)
Pfam (PF01074)
Pfam (PF09261)
Pfam (PF21260)
Pfam (PF07748)
Pfam (PF18230)
Drosophila melanogaster (Fruit fly)Alpha-mannosidase II, AMAN II, MAN II, Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase, Golgi alpha-mannosidase II
2B
(A)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
3C
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
4D
(A)
PHOSPHATE IONnon-polymer95.01Chemie (PO4)
PubChem (1061)
5E
(A)
(4R)-2-METHYLPENTANE-2,4-DIOLnon-polymer118.21Chemie (MRD)
PubChem (7870)
PubChem (5288834)
PubChem (5288845)
6F
(A)
(1R,2R,3S,4R,5R)-5-aminocyclopentane-1,2,3,4-tetrolnon-polymer149.11Chemie (YTB)
PubChem (10261237)
PubChem (10351853)
PubChem (11987837)
PubChem (13880378)
PubChem (17758491)
PubChem (42628065)
PubChem (55284179)
PubChem (55281173)
PubChem (55284180)
PubChem (55285611)
PubChem (133669885)
PubChem (135038555)
7G
(A)
waterwater18.01399Chemie (HOH)
Sequence modifications
A: 13 - 1045 (UniProt: Q24451)
PDBExternal DatabaseDetails
Arg 1-expression tag
Ser 2-expression tag
Ser 3-expression tag
His 4-expression tag
His 5-expression tag
His 6-expression tag
His 7-expression tag
His 8-expression tag
His 9-expression tag
Gly 10-expression tag
Glu 11-expression tag
Phe 12-expression tag
Lys 907Glu 970SEE REMARK 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight119701.6
Non-Polymers*Number of molecules5
Total formula weight648.9
All*Total formula weight120350.5
*Water molecules are not included.

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PDB entries from 2026-04-08

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