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3DVA

Snapshots of catalysis in the E1 subunit of the pyruvate dehydrogenase multi-enzyme complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C, E, G
(A, C, E, G)
Pyruvate dehydrogenase E1 component subunit alphapolymer36941476.14UniProt (P21873)Bacillus stearothermophilus
2B, D, F, H
(B, D, F, H)
Pyruvate dehydrogenase E1 component subunit betapolymer32535495.64UniProt (P21874)Bacillus stearothermophilus
3I, J
(I, J)
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complexpolymer42846392.22UniProt (P11961)Bacillus stearothermophilusE2, Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
4K, M, O, S, T...
(A, C, E, G)
MAGNESIUM IONnon-polymer24.36Chemie (MG)
5L, P, R, U
(A, C, E, G)
2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHEN-2-YL}ETHYL TRIHYDROGEN DIPHOSPHATEnon-polymer423.34Chemie (TPW)
6N, Q
(B, D)
POTASSIUM IONnon-polymer39.12Chemie (K)
7AA, BA, CA, DA, EA...
(E, F, G, H, I...)
waterwater18.01127Chemie (HOH)
Sequence modifications
A, C, E, G: 0 - 368 (UniProt: P21873)
PDBExternal DatabaseDetails
Ala 206Ile 207engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight400671.3
Non-Polymers*Number of molecules12
Total formula weight1917.3
All*Total formula weight402588.6
*Water molecules are not included.

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PDB entries from 2026-02-11

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