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3DP8

Structural characterization of a putative endogenous metal chelator in the periplasmic nickel transporter NikA (nickel butane-1,2,4-tricarboxylate form)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C
(A, B, C)
Nickel-binding periplasmic proteinpolymer50256360.73UniProt (P33590)
Pfam (PF00496)
Escherichia coliNikA
2D, DA, Q
(A, C, B)
NICKEL (II) IONnon-polymer58.73Chemie (NI)
3E, EA, F, FA, G...
(A, C, B)
ACETATE IONnon-polymer59.011Chemie (ACT)
4I
(A)
SULFATE IONnon-polymer96.11Chemie (SO4)
5HA, IA, J, K, V...
(C, A, B)
CHLORIDE IONnon-polymer35.57Chemie (CL)
6JA, L, Y
(C, A, B)
(2R)-butane-1,2,4-tricarboxylic acidnon-polymer190.23Chemie (HCT)
7AA, BA, CA, M, N...
(B, A)
GLYCEROLnon-polymer92.18Chemie (GOL)
8KA, LA, MA
(A, B, C)
waterwater18.0265Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight169082.2
Non-Polymers*Number of molecules33
Total formula weight2477.0
All*Total formula weight171559.2
*Water molecules are not included.

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PDB entries from 2025-06-18

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