3DKV
Crystal structure of adenylate kinase variant AKlse1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Adenylate kinase | polymer | 217 | 24146.6 | 1 | UniProt (P16304) Pfam (PF00406) Pfam (PF05191) | Bacillus subtilis | ATP-AMP transphosphorylase, AK, Superoxide-inducible protein 16, SOI16 |
| 2 | B (A) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 3 | C (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 4 | D (A) | BIS(ADENOSINE)-5'-PENTAPHOSPHATE | non-polymer | 916.4 | 1 | Chemie (AP5) | |||
| 5 | E, F, G (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
| 6 | H (A) | water | water | 18.0 | 206 | Chemie (HOH) |
Sequence modifications
A: 1 - 217 (UniProt: P16304)
| PDB | External Database | Details |
|---|---|---|
| Ile 3 | Leu 3 | SEE REMARK 999 |
| Ala 17 | Gly 17 | SEE REMARK 999 |
| Lys 23 | Asp 23 | SEE REMARK 999 |
| Arg 69 | Lys 69 | SEE REMARK 999 |
| Ser 73 | Gly 73 | SEE REMARK 999 |
| Ser 75 | Asp 75 | SEE REMARK 999 |
| Met 103 | Tyr 103 | SEE REMARK 999 |
| Arg 105 | Lys 105 | SEE REMARK 999 |
| Gln 114 | Glu 114 | SEE REMARK 999 |
| Glu 118 | Asp 118 | SEE REMARK 999 |
| Glu 119 | Val 119 | SEE REMARK 999 |
| Thr 169 | Ser 169 | SEE REMARK 999 |
| Ala 180 | Gln 180 | SEE REMARK 999 |
| Ala 184 | Asp 184 | SEE REMARK 999 |
| Asp 187 | Ser 187 | SEE REMARK 999 |
| Ser 188 | Glu 188 | SEE REMARK 999 |
| Glu 190 | Gly 190 | SEE REMARK 999 |
| Val 191 | Tyr 191 | SEE REMARK 999 |
| Val 193 | Ala 193 | SEE REMARK 999 |
| Phe 205 | Tyr 205 | SEE REMARK 999 |
| Val 210 | Asp 210 | SEE REMARK 999 |
| Ile 211 | Leu 211 | SEE REMARK 999 |
| Gln 217 | Lys 217 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 24146.6 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1192.3 | |
| All* | Total formula weight | 25338.9 |
