3DKV
Crystal structure of adenylate kinase variant AKlse1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004017 | molecular_function | adenylate kinase activity |
| A | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0009123 | biological_process | nucleoside monophosphate metabolic process |
| A | 0009132 | biological_process | nucleoside diphosphate metabolic process |
| A | 0009165 | biological_process | nucleotide biosynthetic process |
| A | 0016301 | molecular_function | kinase activity |
| A | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| A | 0019205 | molecular_function | nucleobase-containing compound kinase activity |
| A | 0044209 | biological_process | AMP salvage |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
| A | 0050145 | molecular_function | nucleoside monophosphate kinase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 218 |
| Chain | Residue |
| A | CYS130 |
| A | CYS133 |
| A | CYS150 |
| A | ASP153 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MG A 219 |
| Chain | Residue |
| A | HOH227 |
| A | HOH238 |
| site_id | AC3 |
| Number of Residues | 39 |
| Details | BINDING SITE FOR RESIDUE AP5 A 220 |
| Chain | Residue |
| A | GLY12 |
| A | LYS13 |
| A | GLY14 |
| A | THR15 |
| A | THR31 |
| A | GLY32 |
| A | ARG36 |
| A | ILE53 |
| A | GLU57 |
| A | THR64 |
| A | GLY85 |
| A | PHE86 |
| A | ARG88 |
| A | GLN92 |
| A | ARG123 |
| A | LEU124 |
| A | ARG127 |
| A | THR136 |
| A | TYR137 |
| A | HIS138 |
| A | PHE141 |
| A | ARG160 |
| A | ARG171 |
| A | GLY197 |
| A | GLN199 |
| A | ILE201 |
| A | HOH226 |
| A | HOH228 |
| A | HOH238 |
| A | HOH261 |
| A | HOH272 |
| A | HOH273 |
| A | HOH275 |
| A | HOH293 |
| A | HOH317 |
| A | HOH396 |
| A | PRO9 |
| A | GLY10 |
| A | ALA11 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO A 221 |
| Chain | Residue |
| A | PHE141 |
| A | ASP200 |
| A | ILE201 |
| A | HOH353 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO A 222 |
| Chain | Residue |
| A | HIS28 |
| A | ILE29 |
| A | SER30 |
| A | MET34 |
| A | ARG71 |
| A | HOH244 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO A 223 |
| Chain | Residue |
| A | GLY14 |
| A | SER30 |
| A | ASP33 |
| A | ARG36 |
| A | ASP84 |
| A | ARG160 |
| A | HOH416 |
Functional Information from PROSITE/UniProt
| site_id | PS00113 |
| Number of Residues | 12 |
| Details | ADENYLATE_KINASE Adenylate kinase signature. FLLDGFPRtvaQ |
| Chain | Residue | Details |
| A | PHE81-GLN92 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 15 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00235, ECO:0000269|PubMed:15100224, ECO:0000269|PubMed:16713575 |
| Chain | Residue | Details |
| A | GLY10 | |
| A | THR136 | |
| A | CYS150 | |
| A | ASP153 | |
| A | ARG160 | |
| A | ARG171 | |
| A | GLN199 | |
| A | THR31 | |
| A | ARG36 | |
| A | GLU57 | |
| A | GLY85 | |
| A | GLN92 | |
| A | ARG127 | |
| A | CYS130 | |
| A | CYS133 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 6 |
| Details | Annotated By Reference To The Literature 1zio |
| Chain | Residue | Details |
| A | LYS13 | |
| A | ARG127 | |
| A | ARG171 | |
| A | ARG160 | |
| A | ASP162 | |
| A | ASP163 |
