3CF5
Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 50S RIBOSOMAL PROTEIN L33 | polymer | 55 | 6374.5 | 1 | UniProt (Q9RSS4) Pfam (PF00471) | DEINOCOCCUS RADIODURANS | |
| 2 | B (2) | 50S RIBOSOMAL PROTEIN L34 | polymer | 47 | 5626.6 | 1 | UniProt (Q9RSH2) Pfam (PF00468) | DEINOCOCCUS RADIODURANS | |
| 3 | C (3) | 50S RIBOSOMAL PROTEIN L35 | polymer | 66 | 7448.1 | 1 | UniProt (Q9RSW6) Pfam (PF01632) | DEINOCOCCUS RADIODURANS | |
| 4 | D (4) | 50S RIBOSOMAL PROTEIN L36 | polymer | 37 | 4322.3 | 1 | UniProt (Q9RSK0) Pfam (PF00444) | DEINOCOCCUS RADIODURANS | |
| 5 | E (5) | THIOSTREPTON | polymer | 19 | 1806.0 | 1 | UniProt (P0C8P8) BIRD (PRD_000223) | STREPTOMYCES AZUREUS | ALANINAMIDE, BRYAMYCIN, THIACTIN |
| 6 | F (A) | 50S RIBOSOMAL PROTEIN L2 | polymer | 274 | 29976.6 | 1 | UniProt (Q9RXJ9) Pfam (PF00181) Pfam (PF03947) | DEINOCOCCUS RADIODURANS | |
| 7 | G (B) | 50S RIBOSOMAL PROTEIN L3 | polymer | 211 | 22477.2 | 1 | UniProt (Q9RXK2) Pfam (PF00297) | DEINOCOCCUS RADIODURANS | |
| 8 | H (C) | 50S RIBOSOMAL PROTEIN L4 | polymer | 205 | 22308.2 | 1 | UniProt (Q9RXK1) Pfam (PF00573) | DEINOCOCCUS RADIODURANS | |
| 9 | I (D) | 50S RIBOSOMAL PROTEIN L5 | polymer | 180 | 20379.9 | 1 | UniProt (Q9RXJ0) Pfam (PF00673) Pfam (PF00281) | DEINOCOCCUS RADIODURANS | |
| 10 | J (E) | 50S RIBOSOMAL PROTEIN L6 | polymer | 185 | 19613.6 | 1 | UniProt (Q9RSL3) Pfam (PF00347) | DEINOCOCCUS RADIODURANS | |
| 11 | K (F) | 50S RIBOSOMAL PROTEIN L11 | polymer | 144 | 14889.2 | 1 | UniProt (Q9RSS7) Pfam (PF03946) Pfam (PF00298) | DEINOCOCCUS RADIODURANS | |
| 12 | L (G) | 50S RIBOSOMAL PROTEIN L13 | polymer | 174 | 19223.2 | 1 | UniProt (Q9RXY1) Pfam (PF00572) | DEINOCOCCUS RADIODURANS | |
| 13 | M (H) | 50S RIBOSOMAL PROTEIN L14 | polymer | 134 | 14256.5 | 1 | UniProt (Q9RXJ2) Pfam (PF00238) | DEINOCOCCUS RADIODURANS | |
| 14 | N (I) | 50S RIBOSOMAL PROTEIN L15 | polymer | 156 | 16894.2 | 1 | UniProt (Q9RSK9) Pfam (PF00828) | DEINOCOCCUS RADIODURANS | |
| 15 | O (J) | 50S RIBOSOMAL PROTEIN L16 | polymer | 142 | 16257.2 | 1 | UniProt (Q9RXJ5) Pfam (PF00252) | DEINOCOCCUS RADIODURANS | |
| 16 | P (K) | 50S RIBOSOMAL PROTEIN L17 | polymer | 116 | 12926.1 | 1 | UniProt (Q9RSJ5) Pfam (PF01196) | DEINOCOCCUS RADIODURANS | |
| 17 | Q (L) | 50S RIBOSOMAL PROTEIN L18 | polymer | 114 | 12163.9 | 1 | UniProt (Q9RSL2) Pfam (PF00861) | DEINOCOCCUS RADIODURANS | |
| 18 | R (M) | 50S RIBOSOMAL PROTEIN L19 | polymer | 166 | 18347.8 | 1 | UniProt (Q9RWB4) Pfam (PF01245) | DEINOCOCCUS RADIODURANS | |
| 19 | S (N) | 50S RIBOSOMAL PROTEIN L20 | polymer | 118 | 13991.3 | 1 | UniProt (Q9RSW7) Pfam (PF00453) | DEINOCOCCUS RADIODURANS | |
| 20 | T (O) | 50S RIBOSOMAL PROTEIN L21 | polymer | 100 | 11165.7 | 1 | UniProt (Q9RY64) Pfam (PF00829) | DEINOCOCCUS RADIODURANS | |
| 21 | U (P) | 50S RIBOSOMAL PROTEIN L22 | polymer | 134 | 15190.9 | 1 | UniProt (Q9RXJ7) Pfam (PF00237) | DEINOCOCCUS RADIODURANS | |
| 22 | V (Q) | 50S RIBOSOMAL PROTEIN L23 | polymer | 95 | 10539.2 | 1 | UniProt (Q9RXK0) Pfam (PF00276) | DEINOCOCCUS RADIODURANS | |
| 23 | W (R) | 50S RIBOSOMAL PROTEIN L24 | polymer | 115 | 12384.4 | 1 | UniProt (Q9RXJ1) Pfam (PF00467) Pfam (PF17136) | DEINOCOCCUS RADIODURANS | |
| 24 | X (S) | 50S RIBOSOMAL PROTEIN L25 | polymer | 237 | 25415.4 | 1 | UniProt (Q9RX88) Pfam (PF01386) Pfam (PF14693) | DEINOCOCCUS RADIODURANS | GENERAL STRESS PROTEIN CTC |
| 25 | Y (T) | 50S RIBOSOMAL PROTEIN L27 | polymer | 91 | 9609.1 | 1 | UniProt (Q9RY65) Pfam (PF01016) | DEINOCOCCUS RADIODURANS | |
| 26 | Z (U) | 50S RIBOSOMAL PROTEIN L28 | polymer | 81 | 8982.6 | 1 | UniProt (Q9RRG8) Pfam (PF00830) | DEINOCOCCUS RADIODURANS | |
| 27 | AA (V) | 50S RIBOSOMAL PROTEIN L29 | polymer | 67 | 7775.0 | 1 | UniProt (Q9RXJ4) Pfam (PF00831) | DEINOCOCCUS RADIODURANS | |
| 28 | BA (W) | 50S RIBOSOMAL PROTEIN L30 | polymer | 55 | 6079.2 | 1 | UniProt (Q9RSL0) Pfam (PF00327) | DEINOCOCCUS RADIODURANS | |
| 29 | CA (X) | RRNA-23S RIBOSOMAL RNA | polymer | 2880 | 933405.0 | 1 | GenBank (AE000513) | DEINOCOCCUS RADIODURANS | |
| 30 | DA (Y) | 50S RIBOSOMAL PROTEIN L32 | polymer | 60 | 6810.0 | 1 | UniProt (P49228) Pfam (PF01783) | DEINOCOCCUS RADIODURANS | |
| 31 | EA (Z) | RRNA-5S RIBOSOMAL RNA | polymer | 123 | 39605.7 | 1 | GenBank (AE000513) | DEINOCOCCUS RADIODURANS | |
| 32 | AB, BB, CB, DB, EB... (X, M, Z) | MAGNESIUM ION | non-polymer | 24.3 | 36 | Chemie (MG) |
Sequence modifications
J: 2 - 142 (UniProt: Q9RXJ5)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 31 |
| Total formula weight | 1366244.6 | |
| Non-Polymers* | Number of molecules | 36 |
| Total formula weight | 875.0 | |
| All* | Total formula weight | 1367119.6 |
