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3BEM

Crystal structure of putative nitroreductase ydfN (2632848) from Bacillus subtilis at 1.65 A resolution

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Putative NAD(P)H nitroreductase ydfNpolymer21825392.22UniProt (P96692)
Pfam (PF00881)
Bacillus subtilis
2C
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
3D
(A)
ACETATE IONnon-polymer59.01Chemie (ACT)
4E, G
(A, B)
FLAVIN MONONUCLEOTIDEnon-polymer456.32Chemie (FMN)
5F, H
(A, B)
S-1,2-PROPANEDIOLnon-polymer76.12Chemie (PGO)
6I, J
(A, B)
waterwater18.0335Chemie (HOH)
Sequence modifications
A, B: 1 - 206 (UniProt: P96692)
PDBExternal DatabaseDetails
Mse -11-expression tag
Gly -10-expression tag
Ser -9-expression tag
Asp -8-expression tag
Lys -7-expression tag
Ile -6-expression tag
His -5-expression tag
His -4-expression tag
His -3-expression tag
His -2-expression tag
His -1-expression tag
His 0-expression tag
Ala 147Lys 147engineered mutation
Ala 148Glu 148engineered mutation
Ala 149Lys 149engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight50784.3
Non-Polymers*Number of molecules6
Total formula weight1182.6
All*Total formula weight51966.9
*Water molecules are not included.

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PDB entries from 2025-07-16

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