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3B08

Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C, E, G
(A, D, G, J)
Polyubiquitin-Cpolymer15217135.74UniProt (P0CG48)
Pfam (PF00240)
Homo sapiens (human)Ubiquitin
2B, D, F, H
(B, E, H, K)
RanBP-type and C3HC4-type zinc finger-containing protein 1polymer647277.24UniProt (Q9WUB0)Mus musculus (mouse)Heme-oxidized IRP2 ubiquitin ligase 1 homolog, HOIL-1, UbcM4-interacting protein 28, Ubiquitin-conjugating enzyme 7-interacting protein 3
3I, J
(C, F)
alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranosebranched342.32In PDB
BIRD (PRD_900006)
GlyTouCan (G92130SN)
trehalose
4K, L, M, N
(B, E, H, K)
ZINC IONnon-polymer65.44Chemie (ZN)
5O, P, Q, R, S...
(A, B, D, E, G...)
waterwater18.0830Chemie (HOH)
Sequence modifications
B, E, H, K: 192 - 250 (UniProt: Q9WUB0)
PDBExternal DatabaseDetails
Gly 187-expression tag
Pro 188-expression tag
Gly 189-expression tag
His 190-expression tag
Met 191-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight97651.2
BranchedNumber of molecules2
Total formula weight684.6
Non-Polymers*Number of molecules4
Total formula weight261.6
All*Total formula weight98597.5
*Water molecules are not included.

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PDB entries from 2024-11-06

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