3B08
Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G, J | Polyubiquitin-C | polymer | 152 | 17135.7 | 4 | UniProt (P0CG48) Pfam (PF00240) In PDB | Homo sapiens (human) | Ubiquitin |
| 2 | B, E, H, K | RanBP-type and C3HC4-type zinc finger-containing protein 1 | polymer | 64 | 7277.2 | 4 | UniProt (Q9WUB0) In PDB | Mus musculus (mouse) | Heme-oxidized IRP2 ubiquitin ligase 1 homolog, HOIL-1, UbcM4-interacting protein 28, Ubiquitin-conjugating enzyme 7-interacting protein 3 |
| 3 | C, F | alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose | branched | 342.3 | 2 | In PDB BIRD (PRD_900006) GlyTouCan (G92130SN) | trehalose | ||
| 4 | B, E, H, K | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 5 | water | water | 18.0 | 830 | Chemie (HOH) |
Sequence modifications
B, E, H, K: 192 - 250 (UniProt: Q9WUB0)
| PDB | External Database | Details |
|---|---|---|
| Gly 187 | - | expression tag |
| Pro 188 | - | expression tag |
| Gly 189 | - | expression tag |
| His 190 | - | expression tag |
| Met 191 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 97651.2 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 684.6 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 261.6 | |
| All* | Total formula weight | 98597.5 |
