3ALA
Crystal structure of vascular adhesion protein-1 in space group C2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Membrane primary amine oxidase | polymer | 748 | 83515.6 | 7 | UniProt (Q16853) Pfam (PF02727) Pfam (PF02728) Pfam (PF01179) | Homo sapiens (human) | Copper amine oxidase, Semicarbazide-sensitive amine oxidase, SSAO, Vascular adhesion protein 1, VAP-1, HPAO |
| 2 | H, K, M, P, S... (H, K, M, P, S...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 7 | In PDB GlyTouCan (G15407YE) | |||
| 3 | I, N, Q, T, W... (I, N, Q, T, W...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 4 | J, O, R, U, X (J, O, R, U, X) | beta-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 5 | In PDB GlyTouCan (G61843VN) | |||
| 5 | L (L) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G28454KX) | |||
| 6 | AA (a) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 1 | In PDB GlyTouCan (G86851RC) | |||
| 7 | BA, FA, JA, MA, QA... (A, B, C, D, E...) | COPPER (II) ION | non-polymer | 63.5 | 7 | Chemie (CU) | |||
| 8 | CA, DA, GA, HA, KA... (A, B, C, D, E...) | CALCIUM ION | non-polymer | 40.1 | 14 | Chemie (CA) | |||
| 9 | EA (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 10 | IA, PA (B, D) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 11 | AB, BB, CB, DB, EB... (B, C, D, E, F...) | water | water | 18.0 | 230 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G: 33 - 763 (UniProt: Q16853)
| PDB | External Database | Details |
|---|---|---|
| Asp 16 | - | expression tag |
| Ile 17 | - | expression tag |
| Val 18 | - | expression tag |
| Asp 19 | - | expression tag |
| Tyr 20 | - | expression tag |
| Lys 21 | - | expression tag |
| Asp 22 | - | expression tag |
| Asp 23 | - | expression tag |
| Asp 24 | - | expression tag |
| Asp 25 | - | expression tag |
| Lys 26 | - | expression tag |
| Glu 27 | - | expression tag |
| Asn 28 | - | expression tag |
| Leu 29 | - | expression tag |
| Tyr 30 | - | expression tag |
| Phe 31 | - | expression tag |
| Gln 32 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 584609.1 | |
| Branched | Number of molecules | 20 |
| Total formula weight | 9426.8 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 1540.4 | |
| All* | Total formula weight | 595576.4 |
