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3A1B

Crystal structure of the DNMT3A ADD domain in complex with histone H3

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA (cytosine-5)-methyltransferase 3A, Histone H3.1polymer15918072.81UniProt (P68431)
UniProt (Q9Y6K1)
Pfam (PF17980)
Pfam (PF21255)
Homo sapiens (human)Dnmt3a, DNA methyltransferase HsaIIIA, DNA MTase HsaIIIA, M.HsaIIIA, H3/a, H3/b, H3/c, H3/d, H3/f, H3/h, H3/i, H3/j, H3/k, H3/l
2B, C, D
(A)
ZINC IONnon-polymer65.43Chemie (ZN)
3E, F, G, H, I...
(A)
1,2-ETHANEDIOLnon-polymer62.17Chemie (EDO)
4L
(A)
waterwater18.038Chemie (HOH)
Sequence modifications
A: 456 - 475 (UniProt: P68431)
A: 476 - 614 (UniProt: Q9Y6K1)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight18072.8
Non-Polymers*Number of molecules10
Total formula weight630.7
All*Total formula weight18703.5
*Water molecules are not included.

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PDB entries from 2025-11-05

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