2ZJR
Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | X | ribosomal 23S RNA | polymer | 2880 | 933405.0 | 1 | PDB (2ZJQ) | Deinococcus radiodurans | |
| 2 | Y | ribosomal 5S RNA | polymer | 123 | 39605.7 | 1 | PDB (2ZJQ) | Deinococcus radiodurans | |
| 3 | A | 50S ribosomal protein L2 | polymer | 274 | 29976.6 | 1 | UniProt (Q9RXJ9) Pfam (PF00181) Pfam (PF03947) In PDB | Deinococcus radiodurans | |
| 4 | B | 50S ribosomal protein L3 | polymer | 211 | 22477.2 | 1 | UniProt (Q9RXK2) Pfam (PF00297) In PDB | Deinococcus radiodurans | |
| 5 | C | 50S ribosomal protein L4 | polymer | 205 | 22308.2 | 1 | UniProt (Q9RXK1) Pfam (PF00573) In PDB | Deinococcus radiodurans | |
| 6 | D | 50S ribosomal protein L5 | polymer | 180 | 20379.9 | 1 | UniProt (Q9RXJ0) Pfam (PF00673) Pfam (PF00281) In PDB | Deinococcus radiodurans | |
| 7 | E | 50S ribosomal protein L6 | polymer | 185 | 19613.6 | 1 | UniProt (Q9RSL3) Pfam (PF00347) In PDB | Deinococcus radiodurans | |
| 8 | F | 50S ribosomal protein L11 | polymer | 144 | 14889.2 | 1 | UniProt (Q9RSS7) Pfam (PF03946) Pfam (PF00298) In PDB | Deinococcus radiodurans | |
| 9 | G | 50S ribosomal protein L13 | polymer | 174 | 19223.2 | 1 | UniProt (Q9RXY1) Pfam (PF00572) In PDB | Deinococcus radiodurans | |
| 10 | H | 50S ribosomal protein L14 | polymer | 134 | 14256.5 | 1 | UniProt (Q9RXJ2) Pfam (PF00238) In PDB | Deinococcus radiodurans | |
| 11 | I | 50S ribosomal protein L15 | polymer | 156 | 16894.2 | 1 | UniProt (Q9RSK9) Pfam (PF00828) In PDB | Deinococcus radiodurans | |
| 12 | J | 50S ribosomal protein L16 | polymer | 142 | 16257.2 | 1 | UniProt (Q9RXJ5) Pfam (PF00252) In PDB | Deinococcus radiodurans | |
| 13 | K | 50S ribosomal protein L17 | polymer | 116 | 12926.1 | 1 | UniProt (Q9RSJ5) Pfam (PF01196) In PDB | Deinococcus radiodurans | |
| 14 | L | 50S ribosomal protein L18 | polymer | 114 | 12163.9 | 1 | UniProt (Q9RSL2) Pfam (PF00861) In PDB | Deinococcus radiodurans | |
| 15 | M | 50S ribosomal protein L19 | polymer | 166 | 18347.8 | 1 | UniProt (Q9RWB4) Pfam (PF01245) In PDB | Deinococcus radiodurans | |
| 16 | N | 50S ribosomal protein L20 | polymer | 118 | 13991.3 | 1 | UniProt (Q9RSW7) Pfam (PF00453) In PDB | Deinococcus radiodurans | |
| 17 | O | 50S ribosomal protein L21 | polymer | 100 | 11165.7 | 1 | UniProt (Q9RY64) Pfam (PF00829) In PDB | Deinococcus radiodurans | |
| 18 | P | 50S ribosomal protein L22 | polymer | 134 | 15190.9 | 1 | UniProt (Q9RXJ7) Pfam (PF00237) In PDB | Deinococcus radiodurans | |
| 19 | Q | 50S ribosomal protein L23 | polymer | 95 | 10539.2 | 1 | UniProt (Q9RXK0) Pfam (PF00276) In PDB | Deinococcus radiodurans | |
| 20 | R | 50S ribosomal protein L24 | polymer | 115 | 12384.4 | 1 | UniProt (Q9RXJ1) Pfam (PF00467) Pfam (PF17136) In PDB | Deinococcus radiodurans | |
| 21 | S | 50S ribosomal protein L25 | polymer | 237 | 25415.4 | 1 | UniProt (Q9RX88) Pfam (PF01386) Pfam (PF14693) In PDB | Deinococcus radiodurans | General stress protein CTC |
| 22 | T | 50S ribosomal protein L27 | polymer | 91 | 9609.1 | 1 | UniProt (Q9RY65) Pfam (PF01016) In PDB | Deinococcus radiodurans | |
| 23 | U | 50S ribosomal protein L28 | polymer | 81 | 8982.6 | 1 | UniProt (Q9RRG8) Pfam (PF00830) In PDB | Deinococcus radiodurans | |
| 24 | V | 50S ribosomal protein L29 | polymer | 67 | 7775.0 | 1 | UniProt (Q9RXJ4) Pfam (PF00831) In PDB | Deinococcus radiodurans | |
| 25 | W | 50S ribosomal protein L30 | polymer | 55 | 6079.2 | 1 | UniProt (Q9RSL0) Pfam (PF00327) In PDB | Deinococcus radiodurans | |
| 26 | Z | 50S ribosomal protein L32 | polymer | 60 | 6810.0 | 1 | UniProt (P49228) Pfam (PF01783) In PDB | Deinococcus radiodurans | |
| 27 | 1 | 50S ribosomal protein L33 | polymer | 55 | 6374.5 | 1 | UniProt (Q9RSS4) Pfam (PF00471) In PDB | Deinococcus radiodurans | |
| 28 | 2 | 50S ribosomal protein L34 | polymer | 47 | 5626.6 | 1 | UniProt (Q9RSH2) Pfam (PF00468) In PDB | Deinococcus radiodurans | |
| 29 | 3 | 50S ribosomal protein L35 | polymer | 66 | 7448.1 | 1 | UniProt (Q9RSW6) Pfam (PF01632) In PDB | Deinococcus radiodurans | |
| 30 | 4 | 50S ribosomal protein L36 | polymer | 37 | 4322.3 | 1 | UniProt (Q9RSK0) Pfam (PF00444) In PDB | Deinococcus radiodurans | |
| 31 | X, Y | MAGNESIUM ION | non-polymer | 24.3 | 35 | Chemie (MG) |
Sequence modifications
J: 2 - 142 (UniProt: Q9RXJ5)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 30 |
| Total formula weight | 1364438.6 | |
| Non-Polymers* | Number of molecules | 35 |
| Total formula weight | 850.7 | |
| All* | Total formula weight | 1365289.3 |
