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2XVK

crystal structure of alpha-xylosidase (GH31) from Cellvibrio japonicus in complex with 5-fluoro-alpha-D-xylopyranosyl fluoride

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
ALPHA-XYLOSIDASE, PUTATIVE, XYL31Apolymer1020115203.91UniProt (B3PBD9)
Pfam (PF13802)
Pfam (PF01055)
Pfam (PF21365)
Pfam (PF17137)
CELLVIBRIO JAPONICUSALPHA XYLOSIDASE
2B, C, D, E
(A)
CHLORIDE IONnon-polymer35.54Chemie (CL)
3F
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
4G
(A)
(2R,3S,5R,6S)-2,6-DIFLUOROOXANE-3,4,5-TRIOLnon-polymer170.11Chemie (FFX)
5H
(A)
waterwater18.083Chemie (HOH)
Sequence modifications
A: 1 - 988 (UniProt: B3PBD9)
PDBExternal DatabaseDetails
Lys 989-expression tag
Val 990-expression tag
Val 991-expression tag
Ile 992-expression tag
Asn 993-expression tag
Ser 994-expression tag
Lys 995-expression tag
Leu 996-expression tag
Glu 997-expression tag
Gly 998-expression tag
Lys 999-expression tag
Pro 1000-expression tag
Ile 1001-expression tag
Pro 1002-expression tag
Asn 1003-expression tag
Pro 1004-expression tag
Leu 1005-expression tag
Leu 1006-expression tag
Gly 1007-expression tag
Leu 1008-expression tag
Asp 1009-expression tag
Ser 1010-expression tag
Thr 1011-expression tag
Arg 1012-expression tag
Thr 1013-expression tag
Gly 1014-expression tag
His 1015-expression tag
His 1016-expression tag
His 1017-expression tag
His 1018-expression tag
His 1019-expression tag
His 1020-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight115203.9
Non-Polymers*Number of molecules6
Total formula weight370.6
All*Total formula weight115574.5
*Water molecules are not included.

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PDB entries from 2025-12-17

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