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2XRY

X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DEOXYRIBODIPYRIMIDINE PHOTOLYASEpolymer48255123.51UniProt (Q8PYK9)
Pfam (PF00875)
METHANOSARCINA MAZEICLASS II CPD PHOTOLYASE
2B
(A)
FLAVIN-ADENINE DINUCLEOTIDEnon-polymer785.51Chemie (FAD)
3C, D, E, F, G...
(A)
SULFATE IONnon-polymer96.19Chemie (SO4)
4L, M
(A)
GLYCEROLnon-polymer92.12Chemie (GOL)
5N
(A)
waterwater18.0375Chemie (HOH)
Sequence modifications
A: 3 - 464 (UniProt: Q8PYK9)
PDBExternal DatabaseDetails
Met -17-expression tag
Gly -16-expression tag
Ser -15-expression tag
Ser -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
His -9-expression tag
His -8-expression tag
Ser -7-expression tag
Ser -6-expression tag
Gly -5-expression tag
Leu -4-expression tag
Val -3-expression tag
Pro -2-expression tag
Arg -1-expression tag
Gly 0-expression tag
Ser 1-expression tag
His 2-expression tag
Thr 377Met 377engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight55123.5
Non-Polymers*Number of molecules12
Total formula weight1834.3
All*Total formula weight56957.8
*Water molecules are not included.

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PDB entries from 2025-06-18

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