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2XRY

X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000719biological_processphotoreactive repair
A0003677molecular_functionDNA binding
A0003904molecular_functiondeoxyribodipyrimidine photo-lyase activity
A0006281biological_processDNA repair
A0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAD A 1463
ChainResidue
ATYR252
AILE302
ATRP305
ALYS306
ASER309
ALYS372
AGLY375
AARG378
AMET379
AALA382
AASN403
ALEU264
AASP409
AGLY410
AASN414
AGLY415
ASER422
AGOL1474
AHOH2084
AHOH2354
AHOH2355
AHOH2356
ASER265
AHOH2357
AHOH2375
AASN266
ALEU267
ASER268
ALEU271
APHE298
AGLU301

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 A 1464
ChainResidue
AGLY65
AILE66
AARG67
AARG215
AALA216
APHE225
AARG405
AHOH2179
AHOH2358
AHOH2359

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1465
ChainResidue
AALA160
AHIS161
AARG164
AHOH2325
AHOH2360

site_idAC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 A 1466
ChainResidue
ALYS129
AHIS156
ATYR158
APRO326
AHOH2151
AHOH2265
AHOH2361
AHOH2362
AHOH2363
AHOH2366

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1467
ChainResidue
AGLN77
AGLU80
ALEU200
ASER201
AHOH2072
AHOH2077

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1468
ChainResidue
ALYS449
APHE452
AASP453
AVAL454
ALYS455

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 1469
ChainResidue
ALYS74
APRO292
AGLY293
ASER294
ALYS295
ALYS296
AHOH2071
AHOH2242
AHOH2365

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 1470
ChainResidue
AASP96
AGLY98
AGLU99
ASER327
ALYS330
AHOH2362
AHOH2366
AHOH2367
AHOH2368

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1471
ChainResidue
ASER153
AGLN154
ALYS166
AHOH2143
AHOH2369

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1472
ChainResidue
ASER26
AARG27
ASER118
AHOH2118
AHOH2231
AHOH2370
AHOH2371

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1473
ChainResidue
ATYR319
AASP320
ATYR416
AHOH2322
AHOH2372
AHOH2373
AARG121
AILE122

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1474
ChainResidue
ATRP305
AMET379
AGLY418
ATRP421
AFAD1463
AHOH2374
AHOH2375

222036

PDB entries from 2024-07-03

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