2X7J
Structure of the menaquinone biosynthesis protein MenD from Bacillus subtilis
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE -1-CARBOXYLATE SYNTHASE | polymer | 604 | 66954.8 | 4 | UniProt (P23970) Pfam (PF02776) Pfam (PF16582) Pfam (PF02775) In PDB | BACILLUS SUBTILIS | MENAQUINONE BIOSYNTHESIS PROTEIN MEND, SEPHCHC SYNTHASE, MEND |
2 | A, B, C, D | THIAMINE DIPHOSPHATE | non-polymer | 425.3 | 4 | Chemie (TPP) | |||
3 | A, B, C, D | MANGANESE (II) ION | non-polymer | 54.9 | 4 | Chemie (MN) | |||
4 | A, B, C, D | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
5 | A, B, C, D | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) | |||
6 | D, A, B, C | SULFATE ION | non-polymer | 96.1 | 8 | Chemie (SO4) | |||
7 | water | water | 18.0 | 1074 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 580 (UniProt: P23970)
PDB | External Database | Details |
---|---|---|
Met -23 | - | expression tag |
Gly -22 | - | expression tag |
Ser -21 | - | expression tag |
Ser -20 | - | expression tag |
His -19 | - | expression tag |
His -18 | - | expression tag |
His -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
Ser -13 | - | expression tag |
Ser -12 | - | expression tag |
Gly -11 | - | expression tag |
Glu -10 | - | expression tag |
Asn -9 | - | expression tag |
Leu -8 | - | expression tag |
Tyr -7 | - | expression tag |
Phe -6 | - | expression tag |
Gln -5 | - | expression tag |
Gly -4 | - | expression tag |
His -3 | - | expression tag |
Met -2 | - | expression tag |
Leu -1 | - | expression tag |
Glu 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 267819.3 | |
Non-Polymers* | Number of molecules | 24 |
Total formula weight | 3029.7 | |
All* | Total formula weight | 270849.1 |