2RIC
Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with L-glycero-D-manno-heptopyranosyl-(1-3)-L-glycero-D-manno-heptopyranose
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Pulmonary surfactant-associated protein D | polymer | 160 | 17272.2 | 3 | UniProt (P35247) Pfam (PF09006) Pfam (PF00059) | Homo sapiens (human) | SP-D; PSP-D; Lung surfactant protein D |
| 2 | D, E (D, E) | L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose | branched | 402.3 | 2 | In PDB GlyTouCan (G68344AN) | |||
| 3 | F, G, H, J, K... (A, B, C) | CALCIUM ION | non-polymer | 40.1 | 9 | Chemie (CA) | |||
| 4 | I (A) | L-glycero-alpha-D-manno-heptopyranose | non-polymer | 210.2 | 1 | Chemie (GMH) | |||
| 5 | P, Q, R (A, B, C) | water | water | 18.0 | 427 | Chemie (HOH) |
Sequence modifications
A, B, C: 203 - 355 (UniProt: P35247)
| PDB | External Database | Details |
|---|---|---|
| Ala 196 | - | expression tag |
| Met 197 | - | expression tag |
| Ala 198 | - | expression tag |
| Asp 199 | - | expression tag |
| Ile 200 | - | expression tag |
| Gly 201 | - | expression tag |
| Ser 202 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 51816.6 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 804.7 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 570.9 | |
| All* | Total formula weight | 53192.2 |
