2RDJ
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (C, E) | DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3') | polymer | 14 | 4280.8 | 2 | |||
| 2 | B (D) | DNA (5'-D(P*DTP*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3') | polymer | 16 | 4889.2 | 1 | |||
| 3 | D (F) | DNA (5'-D(P*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3') | polymer | 15 | 4585.0 | 1 | |||
| 4 | E, F (A, B) | DNA polymerase IV | polymer | 352 | 40257.9 | 2 | UniProt (Q97W02) Pfam (PF00817) Pfam (PF11798) Pfam (PF11799) | Sulfolobus solfataricus | Pol IV |
| 5 | G, H, K, L (A, B) | CALCIUM ION | non-polymer | 40.1 | 4 | Chemie (CA) PubChem (271) | |||
| 6 | I (A) | THYMIDINE-5'-PHOSPHATE | non-polymer | 322.2 | 1 | Chemie (TMP) PubChem (1139) PubChem (444919) PubChem (5748250) PubChem (10147784) PubChem (18531120) PubChem (20711568) PubChem (23657880) PubChem (24802545) PubChem (44361457) PubChem (25113134) PubChem (9700) PubChem (51397487) PubChem (5274091) PubChem (129069890) PubChem (133126478) PubChem (164603144) | |||
| 7 | J (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) PubChem (753) | |||
| 8 | M, N, O, P, Q... (C, D, E, F, A...) | water | water | 18.0 | 305 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 98551.5 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 574.6 | |
| All* | Total formula weight | 99126.1 |
