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2Q5L

X-ray structure of phenylpyruvate decarboxylase in complex with 2-(1-hydroxyethyl)-3-deaza-ThDP

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
PHENYLPYRUVATE DECARBOXYLASEpolymer56560326.92UniProt (P51852)
Pfam (PF02776)
Pfam (PF00205)
Pfam (PF02775)
Azospirillum brasilensePPDC
2C, H
(A, B)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
3D, I
(A, B)
CHLORIDE IONnon-polymer35.52Chemie (CL)
4E, J
(A, B)
2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-[(1S)-1-HYDROXYETHYL]-3-METHYL-2-THIENYL}ETHYL TRIHYDROGEN DIPHOSPHATEnon-polymer467.42Chemie (S1T)
5F, K
(A, B)
2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-[(1R)-1-HYDROXYETHYL]-3-METHYL-2-THIENYL}ETHYL TRIHYDROGEN DIPHOSPHATEnon-polymer467.42Chemie (R1T)
6G, L
(A, B)
GLYCEROLnon-polymer92.12Chemie (GOL)
7M, N
(A, B)
waterwater18.01010Chemie (HOH)
Sequence modifications
A, B: 1 - 545 (UniProt: P51852)
PDBExternal DatabaseDetails
Met -19-expression tag
Gly -18-expression tag
Ser -17-expression tag
Ser -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
Ser -9-expression tag
Ser -8-expression tag
Gly -7-expression tag
Leu -6-expression tag
Val -5-expression tag
Pro -4-expression tag
Arg -3-expression tag
Gly -2-expression tag
Ser -1-expression tag
His 0-expression tag
Gln 155Leu 155expression tag
Arg 327Gly 327SEE REMARK 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight120653.7
Non-Polymers*Number of molecules10
Total formula weight2173.2
All*Total formula weight122826.9
*Water molecules are not included.

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PDB entries from 2025-06-18

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