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2IBK

Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(D)
5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*AP*T)-3'polymer144424.91
2B
(E)
5'-D(*TP*CP*AP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'polymer175058.31
3C
(A)
DNA polymerase IVpolymer35240257.91UniProt (Q97W02)
Pfam (PF00817)
Pfam (PF11798)
Pfam (PF11799)
Sulfolobus solfataricusPol IV
4D
(E)
1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENEnon-polymer304.31Chemie (BAP)
5E, I, J
(E, A)
1,2-ETHANEDIOLnon-polymer62.13Chemie (EDO)
6F
(E)
GLYCEROLnon-polymer92.11Chemie (GOL)
7G, H
(A)
CALCIUM IONnon-polymer40.12Chemie (CA)
8K
(A)
PYROPHOSPHATE 2-non-polymer176.01Chemie (POP)
9L, M, N
(D, E, A)
waterwater18.0201Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight49741.1
Non-Polymers*Number of molecules8
Total formula weight838.8
All*Total formula weight50579.8
*Water molecules are not included.

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PDB entries from 2025-07-23

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