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2IBK

Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_id1
Number of Residues
Details
ChainResidue

site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 401
ChainResidue
AASP7
APHE8
AASP105
APOP405
AHOH492

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 402
ChainResidue
AHOH492
AHOH500
DDT14
AASP105
AGLU106
APOP405
AHOH465

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE BAP E 1106
ChainResidue
ALYS78
AGLU79
AARG247
AGLU271
ATYR274
ALYS275
EDG106
EGOL409
EHOH1108
EHOH1114

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO E 406
ChainResidue
EDT113
EDC114

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 407
ChainResidue
ASER338
ALYS339
AHOH534
AHOH539

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 408
ChainResidue
ATYR274
AHOH541
EGOL409

site_idAC7
Number of Residues16
DetailsBINDING SITE FOR RESIDUE POP A 405
ChainResidue
AASP7
APHE8
AASP9
ATYR10
APHE11
ATHR45
ATYR48
AARG51
AASP105
ALYS159
ACA401
ACA402
AHOH415
AHOH420
AHOH500
AHOH538

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL E 409
ChainResidue
AGLU79
AEDO408
EDG106
EBAP1106

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE:
ChainResidueDetails
AGLU106

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12

222926

PDB entries from 2024-07-24

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