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2DV3

Crystal structure of Leu65 to Arg mutant of Diphthine synthase

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
diphthine synthasepolymer26529657.42UniProt (O58456)Pyrococcus horikoshiiDiphthamide biosynthesis methyltransferase
2C
(A)
SODIUM IONnon-polymer23.01Chemie (NA)
PubChem (923)
3D
(A)
S-ADENOSYL-L-HOMOCYSTEINEnon-polymer384.41Chemie (SAH)
PubChem (16760024)
PubChem (25210495)
PubChem (44361184)
PubChem (46936206)
PubChem (50989525)
PubChem (51380914)
PubChem (177678424)
PubChem (52224398)
PubChem (21125603)
PubChem (25203782)
PubChem (52224400)
PubChem (57544532)
PubChem (59046843)
PubChem (59170628)
PubChem (59576228)
PubChem (6419189)
PubChem (66805708)
PubChem (70689219)
PubChem (70702054)
PubChem (70832431)
PubChem (193)
PubChem (13792)
PubChem (189149)
PubChem (439155)
PubChem (164157219)
PubChem (118374891)
PubChem (118560068)
PubChem (5284331)
PubChem (126969526)
PubChem (129105892)
PubChem (71170554)
PubChem (143518505)
PubChem (154578335)
PubChem (13231890)
PubChem (163054214)
PubChem (163335525)
4E
(B)
CHLORIDE IONnon-polymer35.51Chemie (CL)
PubChem (312)
5F, G
(B)
GLYCEROLnon-polymer92.12Chemie (GOL)
PubChem (753)
6H
(B)
FORMIC ACIDnon-polymer46.01Chemie (FMT)
PubChem (284)
7I, J
(A, B)
waterwater18.0389Chemie (HOH)
Sequence modifications
A, B: 1 - 265 (UniProt: O58456)
PDBExternal DatabaseDetails
Arg 65Leu 65engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight59314.8
Non-Polymers*Number of molecules6
Total formula weight673.1
All*Total formula weight59987.9
*Water molecules are not included.

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PDB entries from 2026-03-25

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