2CBI
Structure of the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | HYALURONIDASE | polymer | 594 | 66688.7 | 2 | UniProt (Q8XL08) Pfam (PF02838) Pfam (PF07555) Pfam (PF21774) UniProt (by SIFTS) (Q0TR53) In PDB | CLOSTRIDIUM PERFRINGENS | |
| 2 | A | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 3 | A | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 4 | A, B | GAMMA-BUTYROLACTONE | non-polymer | 86.1 | 2 | Chemie (GBL) | |||
| 5 | A, B | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
| 6 | B | ZINC ION | non-polymer | 65.4 | 11 | Chemie (ZN) | |||
| 7 | water | water | 18.0 | 650 | Chemie (HOH) |
Sequence modifications
A, B: 31 - 624 (UniProt: Q8XL08)
| PDB | External Database | Details |
|---|---|---|
| Gln 196 | Lys 196 | conflict |
| Ser 234 | Asn 234 | conflict |
| Asn 244 | Asp 244 | conflict |
| Asp 268 | Glu 268 | conflict |
| Thr 279 | Ala 279 | conflict |
| Ala 348 | Thr 348 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 133377.4 | |
| Non-Polymers* | Number of molecules | 17 |
| Total formula weight | 1207.4 | |
| All* | Total formula weight | 134584.8 |
