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2B8P

Crystal structure of Acanthamoeba polyphaga mimivirus NDK, the first viral nucleoside diphosphate kinase

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Probable nucleoside diphosphate kinasepolymer15718174.52UniProt (Q5UQL3)
Pfam (PF00334)
MimivirusNDK, NDP kinase
2C, D, E, F
(A, B)
SULFATE IONnon-polymer96.14Chemie (SO4)
3G, H
(A, B)
waterwater18.076Chemie (HOH)
Sequence modifications
A, B: 2 - 137 (UniProt: Q5UQL3)
PDBExternal DatabaseDetails
Ser -19-expression tag
Tyr -18-expression tag
Tyr -17-expression tag
His -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
Leu -10-expression tag
Glu -9-expression tag
Ser -8-expression tag
Thr -7-expression tag
Ser -6-expression tag
Leu -5-expression tag
Tyr -4-expression tag
Lys -3-expression tag
Lys -2-expression tag
Ala -1-expression tag
Gly 0-expression tag
Leu 1-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight36349.0
Non-Polymers*Number of molecules4
Total formula weight384.3
All*Total formula weight36733.2
*Water molecules are not included.

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PDB entries from 2025-06-11

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