28XB
Cryo-EM structure of the human UAP56-RNA - LENG8-PCID2-SEM1 complex
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Maltose/maltodextrin-binding periplasmic protein,Leukocyte receptor cluster member 8,Leukocyte receptor cluster member 8,Leukocyte receptor cluster member 8,Leukocyte receptor cluster member 8 | polymer | 688 | 76829.6 | 1 | UniProt (Q96PV6) | Escherichia coli | |
| 2 | B (B) | PCI domain-containing protein 2 | polymer | 456 | 51713.3 | 1 | UniProt (Q5JVF3) | Homo sapiens (human) | CSN12-like protein |
| 3 | C (C) | 26S proteasome complex subunit SEM1 | polymer | 49 | 5820.0 | 1 | UniProt (P60896) | Homo sapiens (human) | 26S proteasome complex subunit DSS1,Deleted in split hand/split foot protein 1,Split hand/foot deleted protein 1,Split hand/foot malformation type 1 protein |
| 4 | D (H) | Spliceosome RNA helicase DDX39B | polymer | 428 | 49056.3 | 1 | UniProt (Q13838) | Homo sapiens (human) | 56 kDa U2AF65-associated protein,ATP-dependent RNA helicase p47,DEAD box protein UAP56,HLA-B-associated transcript 1 protein |
| 5 | E (1) | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | polymer | 6 | 1792.0 | 1 | Homo sapiens |
Sequence modifications
A: 113 - 490 (PDB: 28XB)
A: 491 - 800 (UniProt: Q96PV6)
B: 1 - 399 (UniProt: Q5JVF3)
A: 491 - 800 (UniProt: Q96PV6)
B: 1 - 399 (UniProt: Q5JVF3)
| PDB | External Database | Details |
|---|---|---|
| Gly -56 | - | expression tag |
| Lys -55 | - | expression tag |
| Pro -54 | - | expression tag |
| Ile -53 | - | expression tag |
| Pro -52 | - | expression tag |
| Asn -51 | - | expression tag |
| Pro -50 | - | expression tag |
| Leu -49 | - | expression tag |
| Leu -48 | - | expression tag |
| Gly -47 | - | expression tag |
| Leu -46 | - | expression tag |
| Asp -45 | - | expression tag |
| Ser -44 | - | expression tag |
| Thr -43 | - | expression tag |
| Gly -42 | - | expression tag |
| Ser -41 | - | expression tag |
| Gly -40 | - | expression tag |
| Lys -39 | - | expression tag |
| Pro -38 | - | expression tag |
| Ile -37 | - | expression tag |
| Pro -36 | - | expression tag |
| Asn -35 | - | expression tag |
| Pro -34 | - | expression tag |
| Leu -33 | - | expression tag |
| Leu -32 | - | expression tag |
| Gly -31 | - | expression tag |
| Leu -30 | - | expression tag |
| Asp -29 | - | expression tag |
| Ser -28 | - | expression tag |
| Thr -27 | - | expression tag |
| Gly -26 | - | expression tag |
| Ser -25 | - | expression tag |
| Gly -24 | - | expression tag |
| Lys -23 | - | expression tag |
| Pro -22 | - | expression tag |
| Ile -21 | - | expression tag |
| Pro -20 | - | expression tag |
| Asn -19 | - | expression tag |
| Pro -18 | - | expression tag |
| Leu -17 | - | expression tag |
| Leu -16 | - | expression tag |
| Gly -15 | - | expression tag |
| Leu -14 | - | expression tag |
| Asp -13 | - | expression tag |
| Ser -12 | - | expression tag |
| Thr -11 | - | expression tag |
| Ser -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Gly -8 | - | expression tag |
| Leu -7 | - | expression tag |
| Glu -6 | - | expression tag |
| Val -5 | - | expression tag |
| Leu -4 | - | expression tag |
| Phe -3 | - | expression tag |
| Gln -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Pro 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 185211.1 | |
| All* | Total formula weight | 185211.1 |
