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1Z4K

Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with thymidine 3'-monophosphate

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
5'(3')-deoxyribonucleotidasepolymer19722840.11UniProt (Q9NPB1)
Pfam (PF06941)
Homo sapiens (human)Mitochondrial deoxyribonucleotidase, 5',3'-nucleotidase, mitochondrial, Deoxy-5'-nucleotidase 2, dNT-2
2B
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
3C
(A)
THYMIDINE-3'-PHOSPHATEnon-polymer322.21Chemie (T3P)
4D
(A)
waterwater18.0185Chemie (HOH)
Sequence modifications
A: 32 - 228 (UniProt: Q9NPB1)
PDBExternal DatabaseDetails
Asn 41Asp 41engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight22840.1
Non-Polymers*Number of molecules2
Total formula weight346.5
All*Total formula weight23186.6
*Water molecules are not included.

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PDB entries from 2025-12-24

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