1Z4K

Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with thymidine 3'-monophosphate

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0008253	molecular_function	5'-nucleotidase activity
A	0009264	biological_process	deoxyribonucleotide catabolic process

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 229

Chain	Residue
A	ASN41
A	ASP43
A	ASP176
A	T3P4341
A	HOH4430
A	HOH4454

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site_id	AC2
Number of Residues	21
Details	BINDING SITE FOR RESIDUE T3P A 4341

Chain	Residue
A	PHE49
A	PHE75
A	TRP76
A	VAL77
A	TRP96
A	THR130
A	SER131
A	PRO132
A	LYS143
A	MG229
A	HOH4342
A	HOH4346
A	HOH4357
A	HOH4371
A	HOH4404
A	HOH4405
A	HOH4430
A	HOH4454
A	ASN41
A	MET42
A	ASP43

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	Active site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"15044615","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Q91","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	1
Details	Active site: {"description":"Proton donor","evidences":[{"source":"PubMed","id":"15044615","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Q91","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"12352955","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16004879","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z4L","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	6
Details	Binding site: {"evidences":[{"source":"PubMed","id":"16004879","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z4J","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"16004879","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z4M","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"PubMed","id":"16004879","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z4L","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	1
Details	Binding site: {"evidences":[{"source":"PubMed","id":"12352955","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16004879","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z4K","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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Catalytic Information from CSA

site_id	CSA1
Number of Residues	2
Details	Annotated By Reference To The Literature 1q91

Chain	Residue	Details
A	ASP43
A	ASN41

---

site_id	MCSA1
Number of Residues	3
Details	M-CSA 812

Chain	Residue	Details
A	ASN41	covalently attached, metal ligand, nucleofuge, nucleophile
A	ASP43	metal ligand
A	ASP176	metal ligand

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