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1YRJ

Crystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotide

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Bacterial 16 S Ribosomal RNA A Site Oligonucleotidepolymer237355.42
2C, E
(A, B)
APRAMYCINnon-polymer539.62Chemie (AM2)
PubChem (16757849)
PubChem (71428)
PubChem (23305085)
PubChem (16395964)
PubChem (439519)
PubChem (44119923)
PubChem (23958199)
PubChem (44784762)
PubChem (45105104)
PubChem (52949248)
PubChem (57397142)
PubChem (53393693)
PubChem (71306481)
PubChem (71313473)
PubChem (73951969)
PubChem (6710735)
PubChem (92328353)
PubChem (92328355)
PubChem (89903933)
PubChem (3081545)
PubChem (96358443)
PubChem (96358448)
PubChem (92328352)
PubChem (92328354)
PubChem (96358449)
PubChem (96358446)
PubChem (102565449)
PubChem (6427043)
PubChem (6604396)
PubChem (122581310)
PubChem (6713994)
PubChem (124511479)
PubChem (124717614)
PubChem (124717616)
PubChem (10098771)
PubChem (118410308)
PubChem (118410321)
PubChem (134693919)
PubChem (134814278)
PubChem (124507110)
PubChem (124511478)
PubChem (124511480)
PubChem (124717613)
PubChem (124717615)
PubChem (12898620)
PubChem (137628585)
PubChem (138107157)
PubChem (126541504)
PubChem (126541519)
PubChem (126969597)
PubChem (129715889)
PubChem (131632422)
PubChem (134780435)
PubChem (134780436)
PubChem (155802492)
PubChem (162960550)
PubChem (162960552)
PubChem (164114074)
PubChem (137706136)
PubChem (140891139)
PubChem (145998733)
PubChem (171317955)
PubChem (162960551)
PubChem (172433808)
3D
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
PubChem (888)
4F
(B)
POTASSIUM IONnon-polymer39.11Chemie (K)
PubChem (813)
5G, H
(A, B)
waterwater18.065Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight14710.8
Non-Polymers*Number of molecules4
Total formula weight1142.6
All*Total formula weight15853.4
*Water molecules are not included.

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PDB entries from 2026-04-01

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