1YO8
Structure of the C-terminal domain of human thrombospondin-2
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | thrombospondin-2 | polymer | 634 | 70872.4 | 1 | UniProt (P35442) Pfam (PF12947) Pfam (PF02412) Pfam (PF05735) In PDB | Homo sapiens (human) | |
2 | B | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G62182OO) | |||
3 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
5 | A | CALCIUM ION | non-polymer | 40.1 | 30 | Chemie (CA) | |||
6 | water | water | 18.0 | 116 | Chemie (HOH) |
Sequence modifications
A: 551 - 1172 (UniProt: P35442)
PDB | External Database | Details |
---|---|---|
Ala 548 | - | cloning artifact |
Asp 549 | - | cloning artifact |
Pro 550 | - | cloning artifact |
Mse 675 | Met 675 | modified residue |
Mse 964 | Met 964 | modified residue |
Mse 1041 | Met 1041 | modified residue |
Mse 1134 | Met 1134 | modified residue |
Mse 1159 | Met 1159 | modified residue |
Ala 1173 | - | expression tag |
Ala 1174 | - | expression tag |
Gly 1175 | - | expression tag |
His 1176 | - | expression tag |
His 1177 | - | expression tag |
His 1178 | - | expression tag |
His 1179 | - | expression tag |
His 1180 | - | expression tag |
His 1181 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 70872.4 | |
Branched | Number of molecules | 2 |
Total formula weight | 1010.9 | |
Non-Polymers* | Number of molecules | 32 |
Total formula weight | 1644.8 | |
All* | Total formula weight | 73528.1 |