1YFL
T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (F, G, H, I) | 5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3' | polymer | 16 | 4898.2 | 4 | |||
| 2 | E, F, G, H (A, B, D, E) | DNA adenine methylase | polymer | 259 | 30461.9 | 4 | UniProt (P04392) Pfam (PF02086) | Enterobacteria phage T4 | Deoxyadenosyl-methyltransferase, M.EcoT4Dam |
| 3 | I, J, K, L (A, B, D, E) | SINEFUNGIN | non-polymer | 381.4 | 4 | Chemie (SFG) PubChem (176612030) PubChem (177116271) PubChem (25246236) PubChem (456189) PubChem (46875078) PubChem (46936257) PubChem (4065234) PubChem (70602121) PubChem (65482) PubChem (6917665) PubChem (70789212) PubChem (92403972) PubChem (93287270) PubChem (93287272) PubChem (93475589) PubChem (12771337) PubChem (93287274) PubChem (12771338) PubChem (131971033) PubChem (131972810) PubChem (138626357) PubChem (156562738) PubChem (162866891) PubChem (163339130) PubChem (168280605) | |||
| 4 | M, N (D, E) | water | water | 18.0 | 2 | Chemie (HOH) |
Sequence modifications
A, B, D, E: 1 - 259 (UniProt: P04392)
| PDB | External Database | Details |
|---|---|---|
| Arg 139 | Gln 139 | SEE REMARK 999 |
| Phe 140 | Tyr 140 | SEE REMARK 999 |
| Leu 209 | Gln 209 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 141440.4 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 1525.5 | |
| All* | Total formula weight | 142965.9 |
