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1YF3

T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(C)
5'-D(*AP*CP*CP*AP*TP*GP*AP*TP*CP*TP*GP*AP*C)-3'polymer133935.61
2B
(D)
5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*CP*AP*TP*GP*G)-3'polymer134006.61
3C, D
(A, B)
DNA adenine methylasepolymer25930510.02UniProt (P04392)
Pfam (PF02086)
Enterobacteria phage T4Deoxyadenosyl-methyltransferase, M.EcoT4Dam
4E, G
(A, B)
S-ADENOSYL-L-HOMOCYSTEINEnon-polymer384.42Chemie (SAH)
5F, H
(A, B)
GLYCEROLnon-polymer92.12Chemie (GOL)
6I, J, K, L
(C, D, A, B)
waterwater18.0204Chemie (HOH)
Sequence modifications
A, B: 1 - 259 (UniProt: P04392)
PDBExternal DatabaseDetails
Tyr 119Asp 119see remark 999
Arg 139Gln 139see remark 999
Phe 140Tyr 140see remark 999
Leu 209Gln 209see remark 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight68962.2
Non-Polymers*Number of molecules4
Total formula weight953.0
All*Total formula weight69915.2
*Water molecules are not included.

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PDB entries from 2024-10-30

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