1YF3
T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003676 | molecular_function | nucleic acid binding |
| A | 0003677 | molecular_function | DNA binding |
| A | 0006260 | biological_process | DNA replication |
| A | 0006298 | biological_process | mismatch repair |
| A | 0008168 | molecular_function | methyltransferase activity |
| A | 0009007 | molecular_function | site-specific DNA-methyltransferase (adenine-specific) activity |
| A | 0009008 | molecular_function | DNA-methyltransferase activity |
| A | 0009307 | biological_process | DNA restriction-modification system |
| A | 0016740 | molecular_function | transferase activity |
| A | 0032259 | biological_process | methylation |
| A | 0043565 | molecular_function | sequence-specific DNA binding |
| A | 0052031 | biological_process | symbiont-mediated perturbation of host defense response |
| A | 0052170 | biological_process | symbiont-mediated suppression of host innate immune response |
| A | 0099018 | biological_process | symbiont-mediated evasion of host restriction-modification system |
| A | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
| B | 0003676 | molecular_function | nucleic acid binding |
| B | 0003677 | molecular_function | DNA binding |
| B | 0006260 | biological_process | DNA replication |
| B | 0006298 | biological_process | mismatch repair |
| B | 0008168 | molecular_function | methyltransferase activity |
| B | 0009007 | molecular_function | site-specific DNA-methyltransferase (adenine-specific) activity |
| B | 0009008 | molecular_function | DNA-methyltransferase activity |
| B | 0009307 | biological_process | DNA restriction-modification system |
| B | 0016740 | molecular_function | transferase activity |
| B | 0032259 | biological_process | methylation |
| B | 0043565 | molecular_function | sequence-specific DNA binding |
| B | 0052031 | biological_process | symbiont-mediated perturbation of host defense response |
| B | 0052170 | biological_process | symbiont-mediated suppression of host innate immune response |
| B | 0099018 | biological_process | symbiont-mediated evasion of host restriction-modification system |
| B | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE SAH A 400 |
| Chain | Residue |
| A | TYR7 |
| A | ILE51 |
| A | GLN52 |
| A | HIS156 |
| A | PHE157 |
| A | ASP171 |
| A | PHE184 |
| A | HOH499 |
| A | HOH510 |
| A | ASN10 |
| A | LYS11 |
| A | PHE32 |
| A | CYS33 |
| A | GLY34 |
| A | GLY35 |
| A | SER37 |
| A | ASP50 |
| site_id | AC2 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE SAH B 401 |
| Chain | Residue |
| B | TYR7 |
| B | ASN10 |
| B | LYS11 |
| B | PHE32 |
| B | CYS33 |
| B | GLY34 |
| B | GLY35 |
| B | SER37 |
| B | ASP50 |
| B | ILE51 |
| B | GLN52 |
| B | LEU155 |
| B | HIS156 |
| B | PHE157 |
| B | ASP171 |
| B | PRO173 |
| B | TYR181 |
| B | PHE184 |
| B | HOH502 |
| B | HOH505 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 497 |
| Chain | Residue |
| B | TYR7 |
| B | THR8 |
| B | GLN52 |
| B | MET114 |
| B | ILE115 |
| B | TYR181 |
| B | HOH512 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 498 |
| Chain | Residue |
| A | TYR7 |
| A | THR8 |
| A | GLN52 |
| A | MET114 |
| A | ILE115 |
Functional Information from PROSITE/UniProt
| site_id | PS00092 |
| Number of Residues | 7 |
| Details | N6_MTASE N-6 Adenine-specific DNA methylases signature. VYVDPPY |
| Chain | Residue | Details |
| A | VAL168-TYR174 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 16 |
| Details | Binding site: {"evidences":[{"source":"PDB","id":"1Q0S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1Q0T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YF3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YFJ","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PDB","id":"1Q0S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YF3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YFJ","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
