1VVJ

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, CB (QA, XA)	16S rRNA	polymer	1522	493958.3	2	GenBank (AP008226.1)	Thermus thermophilus
2	B, DB (QB, XB)	30S ribosomal protein S2	polymer	256	29317.7	2	UniProt (P80371) Pfam (PF00318)	Thermus thermophilus
3	C, EB (QC, XC)	30S ribosomal protein S3	polymer	239	26751.1	2	UniProt (P80372) Pfam (PF07650) Pfam (PF00189)	Thermus thermophilus
4	D, FB (QD, XD)	30S ribosomal protein S4	polymer	209	24373.4	2	UniProt (P80373) Pfam (PF00163) Pfam (PF01479)	Thermus thermophilus
5	E, GB (QE, XE)	30S ribosomal protein S5	polymer	162	17583.4	2	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719)	Thermus thermophilus
6	F, HB (QF, XF)	30S ribosomal protein S6	polymer	101	11988.8	2	UniProt (Q5SLP8) Pfam (PF01250)	Thermus thermophilus
7	G, IB (QG, XG)	30S ribosomal protein S7	polymer	156	18051.0	2	UniProt (P17291) Pfam (PF00177)	Thermus thermophilus
8	H, JB (QH, XH)	30S ribosomal protein S8	polymer	138	15868.6	2	UniProt (Q5SHQ2)	Thermus thermophilus
9	I, KB (QI, XI)	30S ribosomal protein S9	polymer	128	14410.6	2	UniProt (P80374) Pfam (PF00380)	Thermus thermophilus
10	J, LB (QJ, XJ)	30S ribosomal protein S10	polymer	105	11955.0	2	UniProt (Q5SHN7) Pfam (PF00338)	Thermus thermophilus
11	K, MB (QK, XK)	30S ribosomal protein S11	polymer	129	13737.9	2	UniProt (P80376) Pfam (PF00411)	Thermus thermophilus
12	L, NB (QL, XL)	30S ribosomal protein S12	polymer	132	14637.4	2	UniProt (Q5SHN3) Pfam (PF00164)	Thermus thermophilus
13	M, OB (QM, XM)	30S ribosomal protein S13	polymer	126	14338.9	2	UniProt (P80377) Pfam (PF00416)	Thermus thermophilus
14	N, PB (QN, XN)	30S ribosomal protein S14	polymer	61	7158.7	2	UniProt (Q5SHQ1)	Thermus thermophilus
15	O, QB (QO, XO)	30S ribosomal protein S15	polymer	89	10578.4	2	UniProt (Q5SJ76) Pfam (PF00312)	Thermus thermophilus
16	P, RB (QP, XP)	30S ribosomal protein S16	polymer	88	10410.0	2	UniProt (Q5SJH3) Pfam (PF00886)	Thermus thermophilus
17	Q, SB (QQ, XQ)	30S ribosomal protein S17	polymer	105	12325.7	2	UniProt (Q5SHP7)	Thermus thermophilus
18	R, TB (QR, XR)	30S ribosomal protein S18	polymer	88	10258.3	2	UniProt (Q5SLQ0) Pfam (PF01084)	Thermus thermophilus
19	S, UB (QS, XS)	30S ribosomal protein S19	polymer	93	10605.5	2	UniProt (Q5SHP2) Pfam (PF00203)	Thermus thermophilus
20	T, VB (QT, XT)	30S ribosomal protein S20	polymer	106	11736.1	2	UniProt (P80380) Pfam (PF01649)	Thermus thermophilus
21	U, WB (QU, XU)	30S ribosomal protein S21	polymer	27	3350.0	2	UniProt (Q5SIH3) Pfam (PF17070)	Thermus thermophilus
22	V, XB (QV, XV)	P-site tRNA fMet	polymer	77	24802.8	2	GenBank (AP012306.1)	Escherichia coli
23	W, YB (QX, XX)	A-site ASL SufA6	polymer	25	8171.0	2		Synthetic
24	X, ZB (QY, XY)	messenger RNA	polymer	18	5818.5	2		Synthetic
25	AC, Y (RA, YA)	23S rRNA	polymer	2916	948240.6	2	GenBank (AP008226.1)	Thermus thermophilus
26	BC, Z (RB, YB)	5S rRNA	polymer	122	39494.5	2	GenBank (AP008226.1)	Thermus thermophilus
27	AA, CC (RD, YD)	50S ribosomal protein L2	polymer	276	30532.6	2	UniProt (P60405) Pfam (PF00181) Pfam (PF03947)	Thermus thermophilus
28	BA, DC (RE, YE)	50S ribosomal protein L3	polymer	206	22450.2	2	UniProt (Q5SHN8) Pfam (PF00297)	Thermus thermophilus
29	CA, EC (RF, YF)	50S ribosomal protein L4	polymer	210	23271.9	2	UniProt (Q5SHN9) Pfam (PF00573)	Thermus thermophilus
30	DA, FC (RG, YG)	50S ribosomal protein L5	polymer	182	21061.6	2	UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673)	Thermus thermophilus
31	EA, GC (RH, YH)	50S ribosomal protein L6	polymer	180	19568.9	2	UniProt (Q5SHQ3)	Thermus thermophilus
32	FA, HC (RI, YI)	50S ribosomal protein L9	polymer	148	16422.2	2	UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948)	Thermus thermophilus
33	GA, IC (RN, YN)	50S ribosomal protein L13	polymer	140	15927.9	2	UniProt (P60488) Pfam (PF00572)	Thermus thermophilus
34	HA, JC (RO, YO)	50S ribosomal protein L14	polymer	122	13323.6	2	UniProt (Q5SHP8) Pfam (PF00238)	Thermus thermophilus
35	IA, KC (RP, YP)	50S ribosomal protein L15	polymer	150	16319.1	2	UniProt (Q5SHQ7) Pfam (PF00828)	Thermus thermophilus
36	JA, LC (RQ, YQ)	50S ribosomal protein L16	polymer	141	15993.9	2	UniProt (P60489) Pfam (PF00252)	Thermus thermophilus
37	KA, MC (RR, YR)	50S ribosomal protein L17	polymer	118	13750.1	2	UniProt (Q9Z9H5) Pfam (PF01196)	Thermus thermophilus
38	LA, NC (RS, YS)	50S ribosomal protein L18	polymer	112	12639.8	2	UniProt (Q5SHQ4) Pfam (PF00861)	Thermus thermophilus
39	MA, OC (RT, YT)	50S ribosomal protein L19	polymer	146	17188.8	2	UniProt (P60490) Pfam (PF01245)	Thermus thermophilus
40	NA, PC (RU, YU)	50S ribosomal protein L20	polymer	118	13779.3	2	UniProt (P60491) Pfam (PF00453)	Thermus thermophilus
41	OA, QC (RV, YV)	50S ribosomal protein L21	polymer	101	11069.2	2	UniProt (P60492) Pfam (PF00829)	Thermus thermophilus
42	PA, RC (RW, YW)	50S ribosomal protein L22	polymer	113	12808.1	2	UniProt (Q5SHP3) Pfam (PF00237)	Thermus thermophilus
43	QA, SC (RX, YX)	50S ribosomal protein L23	polymer	96	10759.8	2	UniProt (Q5SHP0) Pfam (PF00276)	Thermus thermophilus
44	RA, TC (RY, YY)	50S ribosomal protein L24	polymer	110	12085.6	2	UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136)	Thermus thermophilus
45	SA, UC (RZ, YZ)	50S ribosomal protein L25	polymer	206	23238.6	2	UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693)	Thermus thermophilus
46	TA, VC (R0, Y0)	50S ribosomal protein L27	polymer	85	9529.1	2	UniProt (P60493) Pfam (PF01016)	Thermus thermophilus
47	UA, WC (R1, Y1)	50S ribosomal protein L28	polymer	98	11004.2	2	UniProt (P60494) Pfam (PF00830)	Thermus thermophilus
48	VA, XC (R2, Y2)	50S ribosomal protein L29	polymer	72	8670.3	2	UniProt (Q5SHP6) Pfam (PF00831)	Thermus thermophilus
49	WA, YC (R3, Y3)	50S ribosomal protein L30	polymer	60	6799.1	2	UniProt (Q5SHQ6) Pfam (PF00327)	Thermus thermophilus
50	XA, ZC (R4, Y4)	50S ribosomal protein L32	polymer	71	8300.5	2	UniProt (Q5SJE1) Pfam (PF01197)	Thermus thermophilus
51	AD, YA (R5, Y5)	50S ribosomal protein L33	polymer	60	6722.1	2	UniProt (P80339) Pfam (PF01783)	Thermus thermophilus
52	BD, ZA (R6, Y6)	50S ribosomal protein L34	polymer	54	6632.9	2	UniProt (P35871) Pfam (PF00471)	Thermus thermophilus
53	AB, CD (R7, Y7)	50S ribosomal protein L35	polymer	49	6132.4	2	UniProt (P80340) Pfam (PF00468)	Thermus thermophilus
54	BB, DD (R8, Y8)	tRNA acceptor end mimic	polymer	65	7506.2	2	UniProt (Q5SKU1) Pfam (PF01632)	Thermus thermophilus
55	ED, FD (Z6, Z8)	RNA (5'-R(*CP*CP*(PPU))-3')	polymer	3	1098.9	2		Synthetic
56	AAA, AE, AF, AG, AH... (YA, QA, RA, XA, XV...)	MAGNESIUM ION	non-polymer		24.3	601	Chemie (MG)
57	OF, UQ (QA, XA)	PAROMOMYCIN	non-polymer		615.6	2	Chemie (PAR)
58	PF, TF, VQ, YQ (QD, QN, XD, XN)	ZINC ION	non-polymer		65.4	4	Chemie (ZN)

Contents of the asymmetric unit

Polymers	Number of chains	110
	Total formula weight	4409017.9
Non-Polymers*	Number of molecules	607
	Total formula weight	16100.2
All*	Total formula weight	4425118.1

*Water molecules are not included.