1S72
REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 23S ribosomal RNA | polymer | 2922 | 946090.4 | 1 | GenBank (3377779) | Haloarcula marismortui | |
| 2 | B (9) | 5S ribosomal RNA | polymer | 122 | 39318.4 | 1 | GenBank (3377779) | Haloarcula marismortui | |
| 3 | C (A) | 50S ribosomal protein L2P | polymer | 240 | 25354.7 | 1 | UniProt (P20276) Pfam (PF00181) Pfam (PF03947) | Haloarcula marismortui | Hmal2, HL4 |
| 4 | D (B) | 50S ribosomal protein L3P | polymer | 338 | 37396.4 | 1 | UniProt (P20279) Pfam (PF00297) | Haloarcula marismortui | Hmal3, HL1 |
| 5 | E (C) | 50S ribosomal protein L4E | polymer | 246 | 26442.1 | 1 | UniProt (P12735) Pfam (PF00573) | Haloarcula marismortui | Hmal4, HL6 |
| 6 | F (D) | 50S ribosomal protein L5P | polymer | 177 | 19551.7 | 1 | UniProt (P14124) Pfam (PF00281) Pfam (PF00673) | Haloarcula marismortui | Hmal5, HL13 |
| 7 | G (E) | 50S ribosomal protein L6P | polymer | 178 | 19961.7 | 1 | UniProt (P14135) Pfam (PF00347) | Haloarcula marismortui | Hmal6, HL10 |
| 8 | H (F) | 50S ribosomal protein L7Ae | polymer | 120 | 12791.9 | 1 | UniProt (P12743) Pfam (PF01248) | Haloarcula marismortui | HS6 |
| 9 | I (G) | Acidic ribosomal protein P0 homolog | polymer | 348 | 37213.8 | 1 | UniProt (P15825) Pfam (PF00466) Pfam (PF17777) | Haloarcula marismortui | L10E, HMaL10 |
| 10 | J (H) | 50S ribosomal protein L10e | polymer | 171 | 19068.6 | 1 | Pfam (PF00252) UniProt (by SIFTS) (P60617) | Haloarcula marismortui | |
| 11 | K (I) | 50S ribosomal protein L11P | polymer | 162 | 17097.5 | 1 | UniProt (P14122) Pfam (PF03946) Pfam (PF00298) | Haloarcula marismortui | Hmal11 |
| 12 | L (J) | 50S ribosomal protein L13P | polymer | 145 | 16249.2 | 1 | UniProt (P29198) Pfam (PF00572) | Haloarcula marismortui | Hmal13 |
| 13 | M (K) | 50S ribosomal protein L14P | polymer | 132 | 14191.2 | 1 | UniProt (P22450) Pfam (PF00238) | Haloarcula marismortui | Hmal14, HL27 |
| 14 | N (L) | 50S ribosomal protein L15P | polymer | 165 | 18005.4 | 1 | UniProt (P12737) Pfam (PF00828) | Haloarcula marismortui | Hmal15, HL9 |
| 15 | O (M) | 50S ribosomal protein L15e | polymer | 194 | 22157.9 | 1 | Pfam (PF00827) UniProt (by SIFTS) (P60618) | Haloarcula marismortui | |
| 16 | P (N) | 50S ribosomal protein L18P | polymer | 187 | 20640.9 | 1 | UniProt (P14123) Pfam (PF17144) | Haloarcula marismortui | Hmal18, HL12 |
| 17 | Q (O) | 50S ribosomal protein L18e | polymer | 116 | 12438.9 | 1 | UniProt (P12733) Pfam (PF00828) | Haloarcula marismortui | HL29, L19 |
| 18 | R (P) | 50S ribosomal protein L19E | polymer | 149 | 16796.5 | 1 | UniProt (P14119) Pfam (PF01280) | Haloarcula marismortui | Hmal19, HL24 |
| 19 | S (Q) | 50S ribosomal protein L21e | polymer | 96 | 10567.8 | 1 | UniProt (P12734) Pfam (PF01157) | Haloarcula marismortui | HL31 |
| 20 | T (R) | 50S ribosomal protein L22P | polymer | 155 | 16966.9 | 1 | UniProt (P10970) Pfam (PF00237) | Haloarcula marismortui | Hmal22, HL23 |
| 21 | U (S) | 50S ribosomal protein L23P | polymer | 85 | 9612.5 | 1 | UniProt (P12732) Pfam (PF00276) | Haloarcula marismortui | Hmal23, HL25, L21 |
| 22 | V (T) | 50S ribosomal protein L24P | polymer | 120 | 13671.0 | 1 | UniProt (P10972) Pfam (PF16906) Pfam (PF00467) | Haloarcula marismortui | Hmal24, HL16, HL15 |
| 23 | W (U) | 50S ribosomal protein L24E | polymer | 66 | 7233.7 | 1 | UniProt (P14116) Pfam (PF01246) | Haloarcula marismortui | HL21/HL22 |
| 24 | X (V) | 50S ribosomal protein L29P | polymer | 71 | 7889.9 | 1 | UniProt (P10971) Pfam (PF00831) | Haloarcula marismortui | Hmal29, HL33 |
| 25 | Y (W) | 50S ribosomal protein L30P | polymer | 154 | 17062.9 | 1 | UniProt (P14121) Pfam (PF00327) | Haloarcula marismortui | Hmal30, HL20, HL16 |
| 26 | Z (X) | 50S ribosomal protein L31e | polymer | 92 | 10384.6 | 1 | UniProt (P18138) Pfam (PF01198) | Haloarcula marismortui | L34, HL30 |
| 27 | AA (Y) | 50S ribosomal protein L32E | polymer | 241 | 26455.7 | 1 | UniProt (P12736) Pfam (PF14520) Pfam (PF01655) | Haloarcula marismortui | HL5 |
| 28 | BA (Z) | 50S ribosomal protein L37Ae | polymer | 73 | 8294.2 | 1 | Pfam (PF01780) UniProt (by SIFTS) (P60619) | Haloarcula marismortui | |
| 29 | CA (1) | 50S ribosomal protein L37e | polymer | 57 | 6330.2 | 1 | UniProt (P32410) Pfam (PF01907) | Haloarcula marismortui | L35e |
| 30 | DA (2) | 50S ribosomal protein L39e | polymer | 50 | 6133.1 | 1 | UniProt (P22452) Pfam (PF00832) | Haloarcula marismortui | HL39e, HL46e |
| 31 | EA (3) | 50S ribosomal protein L44E | polymer | 92 | 10815.2 | 1 | UniProt (P32411) Pfam (PF00935) | Haloarcula marismortui | LA, HLA |
| 32 | AB, AC, AD, AE, BB... (0, K, 9, T, A...) | MAGNESIUM ION | non-polymer | 24.3 | 116 | Chemie (MG) | |||
| 33 | KE, LE (0) | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
| 34 | AF, AG, AH, AI, BF... (0, H, J, L, M...) | SODIUM ION | non-polymer | 23.0 | 86 | Chemie (NA) | |||
| 35 | BJ, CI, DI, EI, GH... (3, J, 0, L, M...) | CHLORIDE ION | non-polymer | 35.5 | 22 | Chemie (CL) | |||
| 36 | AJ, LI, UI, XI, YI (3, O, U, Z, 1) | CADMIUM ION | non-polymer | 112.4 | 5 | Chemie (CD) | |||
| 37 | AK, BK, CJ, CK, DJ... (W, X, 0, Y, 9...) | water | water | 18.0 | 7823 | Chemie (HOH) |
Sequence modifications
0: 2 - 2923 (GenBank: 3377779)
A: 0 - 239 (UniProt: P20276)
B: 0 - 337 (UniProt: P20279)
F: 0 - 119 (UniProt: P12743)
K: 1 - 132 (UniProt: P22450)
| PDB | External Database | Details |
|---|---|---|
| C 560 | U 3155 | conflict |
| 1ma 628 | A 3223 | modified residue |
| Omu 2587 | U 5182 | modified residue |
| Omg 2588 | G 5183 | modified residue |
| Ur3 2619 | U 5214 | modified residue |
| Psu 2621 | U 5216 | modified residue |
| PDB | External Database | Details |
|---|---|---|
| Ser 85 | Asp 85 | conflict |
| Ala 160 | Gly 160 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 310 | Pro 310 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Glu 103 | Ala 103 | conflict |
| Asp 105 | Ala 105 | conflict |
| Ala 106 | Thr 106 | conflict |
| Asp 107 | Val 107 | conflict |
| Val 108 | Leu 108 | conflict |
| Asp 110 | Glu 110 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Leu 44 | His 44 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 31 |
| Total formula weight | 1472185.2 | |
| Non-Polymers* | Number of molecules | 231 |
| Total formula weight | 6216.7 | |
| All* | Total formula weight | 1478401.9 |
