Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

1S72

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1023S ribosomal RNApolymer2922946090.41GenBank (3377779)Haloarcula marismortui
295S ribosomal RNApolymer12239318.41GenBank (3377779)Haloarcula marismortui
3A50S ribosomal protein L2Ppolymer24025354.71UniProt (P20276)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Haloarcula marismortuiHmal2, HL4
4B50S ribosomal protein L3Ppolymer33837396.41UniProt (P20279)
Pfam (PF00297)
In PDB		Haloarcula marismortuiHmal3, HL1
5C50S ribosomal protein L4Epolymer24626442.11UniProt (P12735)
Pfam (PF00573)
In PDB		Haloarcula marismortuiHmal4, HL6
6D50S ribosomal protein L5Ppolymer17719551.71UniProt (P14124)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Haloarcula marismortuiHmal5, HL13
7E50S ribosomal protein L6Ppolymer17819961.71UniProt (P14135)
Pfam (PF00347)
In PDB		Haloarcula marismortuiHmal6, HL10
8F50S ribosomal protein L7Aepolymer12012791.91UniProt (P12743)
Pfam (PF01248)
In PDB		Haloarcula marismortuiHS6
9GAcidic ribosomal protein P0 homologpolymer34837213.81UniProt (P15825)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Haloarcula marismortuiL10E, HMaL10
10H50S ribosomal protein L10epolymer17119068.61Pfam (PF00252)
UniProt (by SIFTS) (P60617)
In PDB		Haloarcula marismortui
11I50S ribosomal protein L11Ppolymer16217097.51UniProt (P14122)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Haloarcula marismortuiHmal11
12J50S ribosomal protein L13Ppolymer14516249.21UniProt (P29198)
Pfam (PF00572)
In PDB		Haloarcula marismortuiHmal13
13K50S ribosomal protein L14Ppolymer13214191.21UniProt (P22450)
Pfam (PF00238)
In PDB		Haloarcula marismortuiHmal14, HL27
14L50S ribosomal protein L15Ppolymer16518005.41UniProt (P12737)
Pfam (PF00828)
In PDB		Haloarcula marismortuiHmal15, HL9
15M50S ribosomal protein L15epolymer19422157.91Pfam (PF00827)
UniProt (by SIFTS) (P60618)
In PDB		Haloarcula marismortui
16N50S ribosomal protein L18Ppolymer18720640.91UniProt (P14123)
Pfam (PF17144)
In PDB		Haloarcula marismortuiHmal18, HL12
17O50S ribosomal protein L18epolymer11612438.91UniProt (P12733)
Pfam (PF00828)
In PDB		Haloarcula marismortuiHL29, L19
18P50S ribosomal protein L19Epolymer14916796.51UniProt (P14119)
Pfam (PF01280)
In PDB		Haloarcula marismortuiHmal19, HL24
19Q50S ribosomal protein L21epolymer9610567.81UniProt (P12734)
Pfam (PF01157)
In PDB		Haloarcula marismortuiHL31
20R50S ribosomal protein L22Ppolymer15516966.91UniProt (P10970)
Pfam (PF00237)
In PDB		Haloarcula marismortuiHmal22, HL23
21S50S ribosomal protein L23Ppolymer859612.51UniProt (P12732)
Pfam (PF00276)
In PDB		Haloarcula marismortuiHmal23, HL25, L21
22T50S ribosomal protein L24Ppolymer12013671.01UniProt (P10972)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Haloarcula marismortuiHmal24, HL16, HL15
23U50S ribosomal protein L24Epolymer667233.71UniProt (P14116)
Pfam (PF01246)
In PDB		Haloarcula marismortuiHL21/HL22
24V50S ribosomal protein L29Ppolymer717889.91UniProt (P10971)
Pfam (PF00831)
In PDB		Haloarcula marismortuiHmal29, HL33
25W50S ribosomal protein L30Ppolymer15417062.91UniProt (P14121)
Pfam (PF00327)
In PDB		Haloarcula marismortuiHmal30, HL20, HL16
26X50S ribosomal protein L31epolymer9210384.61UniProt (P18138)
Pfam (PF01198)
In PDB		Haloarcula marismortuiL34, HL30
27Y50S ribosomal protein L32Epolymer24126455.71UniProt (P12736)
Pfam (PF14520)
Pfam (PF01655)
In PDB		Haloarcula marismortuiHL5
28Z50S ribosomal protein L37Aepolymer738294.21Pfam (PF01780)
UniProt (by SIFTS) (P60619)
In PDB		Haloarcula marismortui
29150S ribosomal protein L37epolymer576330.21UniProt (P32410)
Pfam (PF01907)
In PDB		Haloarcula marismortuiL35e
30250S ribosomal protein L39epolymer506133.11UniProt (P22452)
Pfam (PF00832)
In PDB		Haloarcula marismortuiHL39e, HL46e
31350S ribosomal protein L44Epolymer9210815.21UniProt (P32411)
Pfam (PF00935)
In PDB		Haloarcula marismortuiLA, HLA
320, K, 9, T, A...MAGNESIUM IONnon-polymer24.3116Chemie (MG)
330POTASSIUM IONnon-polymer39.12Chemie (K)
340, H, J, L, M...SODIUM IONnon-polymer23.086Chemie (NA)
353, J, 0, L, M...CHLORIDE IONnon-polymer35.522Chemie (CL)
363, O, U, Z, 1CADMIUM IONnon-polymer112.45Chemie (CD)
37waterwater18.07823Chemie (HOH)
Sequence modifications
0: 2 - 2923 (GenBank: 3377779)
PDBExternal DatabaseDetails
C 560U 3155conflict
1ma 628A 3223modified residue
Omu 2587U 5182modified residue
Omg 2588G 5183modified residue
Ur3 2619U 5214modified residue
Psu 2621U 5216modified residue
A: 0 - 239 (UniProt: P20276)
PDBExternal DatabaseDetails
Ser 85Asp 85conflict
Ala 160Gly 160conflict
B: 0 - 337 (UniProt: P20279)
PDBExternal DatabaseDetails
Arg 310Pro 310conflict
F: 0 - 119 (UniProt: P12743)
PDBExternal DatabaseDetails
Glu 103Ala 103conflict
Asp 105Ala 105conflict
Ala 106Thr 106conflict
Asp 107Val 107conflict
Val 108Leu 108conflict
Asp 110Glu 110conflict
K: 1 - 132 (UniProt: P22450)
PDBExternal DatabaseDetails
Leu 44His 44conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains31
Total formula weight1472185.2
Non-Polymers*Number of molecules231
Total formula weight6216.7
All*Total formula weight1478401.9
*Water molecules are not included.

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon