1M1A
LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | I, J | Palindromic 146 Base Pair DNA Fragment | polymer | 146 | 45054.8 | 2 | Synthetic construct | ||
2 | A, E | Histone H3.3C | polymer | 135 | 15320.0 | 2 | UniProt (P02302) Pfam (PF00125) In PDB | Xenopus laevis (African clawed frog) | |
3 | B, F | Histone H4 | polymer | 102 | 11263.2 | 2 | UniProt (A0A8J1LTD2) Pfam (PF15511) UniProt (by SIFTS) (P62799) In PDB | Xenopus laevis (African clawed frog) | |
4 | C, G | Histone H2A type 1 | polymer | 129 | 13962.2 | 2 | UniProt (P06897) Pfam (PF00125) Pfam (PF16211) In PDB | Xenopus laevis (African clawed frog) | |
5 | D, H | Histone H2B | polymer | 125 | 13848.1 | 2 | UniProt (A0A8J0U496) Pfam (PF00125) UniProt (by SIFTS) (P02281) In PDB | Xenopus laevis (African clawed frog) | |
6 | E, I, J | MANGANESE (II) ION | non-polymer | 54.9 | 10 | Chemie (MN) | |||
7 | J | 4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID | non-polymer | 141.1 | 2 | Chemie (IMT) | |||
8 | J | 4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID | non-polymer | 140.1 | 6 | Chemie (PYB) | |||
9 | J | GAMMA-AMINO-BUTANOIC ACID | non-polymer | 103.1 | 1 | Chemie (ABU) | |||
10 | J | BETA-ALANINE | non-polymer | 89.1 | 1 | Chemie (BAL) | |||
11 | J | 3-AMINO-(DIMETHYLPROPYLAMINE) | non-polymer | 102.2 | 1 | Chemie (DIB) | |||
12 | water | water | 18.0 | 220 | Chemie (HOH) |
Sequence modifications
A, E: 401 - 535 (UniProt: P02302)
C, G: 801 - 929 (UniProt: P06897)
PDB | External Database | Details |
---|---|---|
Ser 486 | Arg 87 | conflict |
PDB | External Database | Details |
---|---|---|
Arg 899 | Gly 100 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 198896.9 | |
Non-Polymers* | Number of molecules | 21 |
Total formula weight | 1966.9 | |
All* | Total formula weight | 200863.8 |