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1M1A

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(I, J)
Palindromic 146 Base Pair DNA Fragmentpolymer14645054.82Synthetic construct
2C, G
(A, E)
Histone H3.3Cpolymer13515320.02UniProt (P02302)
Pfam (PF00125)
Xenopus laevis (African clawed frog)
3D, H
(B, F)
Histone H4polymer10211263.22UniProt (A0A8J1LTD2)
Pfam (PF15511)
UniProt (by SIFTS) (P62799)
Xenopus laevis (African clawed frog)
4E, I
(C, G)
Histone H2A type 1polymer12913962.22UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
Xenopus laevis (African clawed frog)
5F, J
(D, H)
Histone H2Bpolymer12513848.12UniProt (A0A8J0U496)
Pfam (PF00125)
UniProt (by SIFTS) (P02281)
Xenopus laevis (African clawed frog)
6EA, K, L, M, N...
(E, I, J)
MANGANESE (II) IONnon-polymer54.910Chemie (MN)
7T, U
(J)
4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACIDnon-polymer141.12Chemie (IMT)
8AA, BA, V, W, Y...
(J)
4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACIDnon-polymer140.16Chemie (PYB)
9X
(J)
GAMMA-AMINO-BUTANOIC ACIDnon-polymer103.11Chemie (ABU)
10CA
(J)
BETA-ALANINEnon-polymer89.11Chemie (BAL)
11DA
(J)
3-AMINO-(DIMETHYLPROPYLAMINE)non-polymer102.21Chemie (DIB)
12FA, GA, HA, IA, JA...
(I, J, A, B, C...)
waterwater18.0220Chemie (HOH)
Sequence modifications
A, E: 401 - 535 (UniProt: P02302)
PDBExternal DatabaseDetails
Ser 486Arg 87conflict
C, G: 801 - 929 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 899Gly 100conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight198896.9
Non-Polymers*Number of molecules21
Total formula weight1966.9
All*Total formula weight200863.8
*Water molecules are not included.

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PDB entries from 2025-06-11

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