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1M1A

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1I, JPalindromic 146 Base Pair DNA Fragmentpolymer14645054.82Synthetic construct
2A, EHistone H3.3Cpolymer13515320.02UniProt (P02302)
Pfam (PF00125)
In PDB
Xenopus laevis (African clawed frog)
3B, FHistone H4polymer10211263.22UniProt (A0A8J1LTD2)
Pfam (PF15511)
UniProt (by SIFTS) (P62799)
In PDB
Xenopus laevis (African clawed frog)
4C, GHistone H2A type 1polymer12913962.22UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
In PDB
Xenopus laevis (African clawed frog)
5D, HHistone H2Bpolymer12513848.12UniProt (A0A8J0U496)
Pfam (PF00125)
UniProt (by SIFTS) (P02281)
In PDB
Xenopus laevis (African clawed frog)
6E, I, JMANGANESE (II) IONnon-polymer54.910Chemie (MN)
7J4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACIDnon-polymer141.12Chemie (IMT)
8J4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACIDnon-polymer140.16Chemie (PYB)
9JGAMMA-AMINO-BUTANOIC ACIDnon-polymer103.11Chemie (ABU)
10JBETA-ALANINEnon-polymer89.11Chemie (BAL)
11J3-AMINO-(DIMETHYLPROPYLAMINE)non-polymer102.21Chemie (DIB)
12waterwater18.0220Chemie (HOH)
Sequence modifications
A, E: 401 - 535 (UniProt: P02302)
PDBExternal DatabaseDetails
Ser 486Arg 87conflict
C, G: 801 - 929 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 899Gly 100conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight198896.9
Non-Polymers*Number of molecules21
Total formula weight1966.9
All*Total formula weight200863.8
*Water molecules are not included.

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PDB entries from 2024-04-24

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