1LWU
Crystal structure of fragment D from lamprey fibrinogen complexed with the peptide Gly-His-Arg-Pro-amide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, D, G, J | Fibrinogen alpha-1 chain | polymer | 119 | 14074.1 | 4 | UniProt (P02674) Pfam (PF08702) In PDB | Petromyzon marinus (Sea lamprey) | |
2 | B, E, H, K | Fibrinogen beta chain | polymer | 323 | 37061.2 | 4 | UniProt (P02678) In PDB | Petromyzon marinus (Sea lamprey) | |
3 | C, F, I, L | Fibrinogen gamma chain | polymer | 323 | 37475.6 | 4 | UniProt (P04115) Pfam (PF08702) Pfam (PF00147) In PDB | Petromyzon marinus (Sea lamprey) | |
4 | M, N, O, P | Peptide Ligand Gly-His-Arg-Pro-NH2 | polymer | 5 | 465.5 | 4 | |||
5 | Q | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
6 | O, H, B, K, M... | 2-acetamido-2-deoxy-alpha-D-glucopyranose | non-polymer | 221.2 | 9 | Chemie (NDG) | |||
7 | E, P, F, H, B... | alpha-D-mannopyranose | non-polymer | 180.2 | 10 | Chemie (MAN) | |||
8 | E, F, H, I, B... | CALCIUM ION | non-polymer | 40.1 | 8 | Chemie (CA) | |||
9 | F, I, C, E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 7 | Chemie (NAG) | |||
10 | E, H | beta-D-mannopyranose | non-polymer | 180.2 | 2 | Chemie (BMA) | |||
11 | H | beta-D-galactopyranose | non-polymer | 180.2 | 1 | Chemie (GAL) |
Sequence modifications
A, D, G, J: 82 - 200 (UniProt: P02674)
C, F, I, L: 79 - 401 (UniProt: P04115)
PDB | External Database | Details |
---|---|---|
Ala 153 | Thr 158 | conflict |
PDB | External Database | Details |
---|---|---|
Pro 137 | Ser 161 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 16 |
Total formula weight | 356305.4 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
Non-Polymers* | Number of molecules | 37 |
Total formula weight | 6202.0 | |
All* | Total formula weight | 362931.8 |