1LOJ
Crystal structure of a Methanobacterial Sm-like archaeal protein (SmAP1) bound to uridine-5'-monophosphate (UMP)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | small nuclear ribonucleoprotein homolog (Sm-like) | polymer | 87 | 9645.1 | 14 | UniProt (O26745) Pfam (PF01423) | Methanothermobacter thermautotrophicus str. Delta H | Sm-like archaeal protein SmAP1; Putative snRNP Sm-like protein |
| 2 | CA, EA, IA, O, U (H, I, K, A, D) | URIDINE-5'-MONOPHOSPHATE | non-polymer | 324.2 | 5 | Chemie (U) | |||
| 3 | BA, DA, FA, HA, JA... (G, H, I, J, K...) | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 14 | Chemie (MPD) PubChem (5288834) | |||
| 4 | AA, GA, KA, MA, Q... (G, J, L, M, B...) | URIDINE | non-polymer | 244.2 | 8 | Chemie (URI) PubChem (6029) | |||
| 5 | OA (N) | URIDINE-5'-MONOPHOSPHATE | non-polymer | 324.2 | 1 | Chemie (U5P) PubChem (6030) | |||
| 6 | AB, BB, CB, DB, QA... (K, L, M, N, A...) | water | water | 18.0 | 387 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H, I, J, K, L, M, N: 1 - 81 (UniProt: O26745)
| PDB | External Database | Details |
|---|---|---|
| Arg 81 | Pro 81 | cloning artifact |
| Gly 82 | - | cloning artifact |
| Lys 83 | - | cloning artifact |
| Leu 84 | - | cloning artifact |
| Ala 85 | - | cloning artifact |
| Ala 86 | - | cloning artifact |
| Ala 87 | - | cloning artifact |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 14 |
| Total formula weight | 135031.1 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 5553.1 | |
| All* | Total formula weight | 140584.2 |
