1LOJ
Crystal structure of a Methanobacterial Sm-like archaeal protein (SmAP1) bound to uridine-5'-monophosphate (UMP)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000398 | biological_process | mRNA splicing, via spliceosome |
| A | 0003723 | molecular_function | RNA binding |
| A | 0034715 | cellular_component | pICln-Sm protein complex |
| A | 0120114 | cellular_component | Sm-like protein family complex |
| A | 1990904 | cellular_component | ribonucleoprotein complex |
| B | 0000398 | biological_process | mRNA splicing, via spliceosome |
| B | 0003723 | molecular_function | RNA binding |
| B | 0034715 | cellular_component | pICln-Sm protein complex |
| B | 0120114 | cellular_component | Sm-like protein family complex |
| B | 1990904 | cellular_component | ribonucleoprotein complex |
| C | 0000398 | biological_process | mRNA splicing, via spliceosome |
| C | 0003723 | molecular_function | RNA binding |
| C | 0034715 | cellular_component | pICln-Sm protein complex |
| C | 0120114 | cellular_component | Sm-like protein family complex |
| C | 1990904 | cellular_component | ribonucleoprotein complex |
| D | 0000398 | biological_process | mRNA splicing, via spliceosome |
| D | 0003723 | molecular_function | RNA binding |
| D | 0034715 | cellular_component | pICln-Sm protein complex |
| D | 0120114 | cellular_component | Sm-like protein family complex |
| D | 1990904 | cellular_component | ribonucleoprotein complex |
| E | 0000398 | biological_process | mRNA splicing, via spliceosome |
| E | 0003723 | molecular_function | RNA binding |
| E | 0034715 | cellular_component | pICln-Sm protein complex |
| E | 0120114 | cellular_component | Sm-like protein family complex |
| E | 1990904 | cellular_component | ribonucleoprotein complex |
| F | 0000398 | biological_process | mRNA splicing, via spliceosome |
| F | 0003723 | molecular_function | RNA binding |
| F | 0034715 | cellular_component | pICln-Sm protein complex |
| F | 0120114 | cellular_component | Sm-like protein family complex |
| F | 1990904 | cellular_component | ribonucleoprotein complex |
| G | 0000398 | biological_process | mRNA splicing, via spliceosome |
| G | 0003723 | molecular_function | RNA binding |
| G | 0034715 | cellular_component | pICln-Sm protein complex |
| G | 0120114 | cellular_component | Sm-like protein family complex |
| G | 1990904 | cellular_component | ribonucleoprotein complex |
| H | 0000398 | biological_process | mRNA splicing, via spliceosome |
| H | 0003723 | molecular_function | RNA binding |
| H | 0034715 | cellular_component | pICln-Sm protein complex |
| H | 0120114 | cellular_component | Sm-like protein family complex |
| H | 1990904 | cellular_component | ribonucleoprotein complex |
| I | 0000398 | biological_process | mRNA splicing, via spliceosome |
| I | 0003723 | molecular_function | RNA binding |
| I | 0034715 | cellular_component | pICln-Sm protein complex |
| I | 0120114 | cellular_component | Sm-like protein family complex |
| I | 1990904 | cellular_component | ribonucleoprotein complex |
| J | 0000398 | biological_process | mRNA splicing, via spliceosome |
| J | 0003723 | molecular_function | RNA binding |
| J | 0034715 | cellular_component | pICln-Sm protein complex |
| J | 0120114 | cellular_component | Sm-like protein family complex |
| J | 1990904 | cellular_component | ribonucleoprotein complex |
| K | 0000398 | biological_process | mRNA splicing, via spliceosome |
| K | 0003723 | molecular_function | RNA binding |
| K | 0034715 | cellular_component | pICln-Sm protein complex |
| K | 0120114 | cellular_component | Sm-like protein family complex |
| K | 1990904 | cellular_component | ribonucleoprotein complex |
| L | 0000398 | biological_process | mRNA splicing, via spliceosome |
| L | 0003723 | molecular_function | RNA binding |
| L | 0034715 | cellular_component | pICln-Sm protein complex |
| L | 0120114 | cellular_component | Sm-like protein family complex |
| L | 1990904 | cellular_component | ribonucleoprotein complex |
| M | 0000398 | biological_process | mRNA splicing, via spliceosome |
| M | 0003723 | molecular_function | RNA binding |
| M | 0034715 | cellular_component | pICln-Sm protein complex |
| M | 0120114 | cellular_component | Sm-like protein family complex |
| M | 1990904 | cellular_component | ribonucleoprotein complex |
| N | 0000398 | biological_process | mRNA splicing, via spliceosome |
| N | 0003723 | molecular_function | RNA binding |
| N | 0034715 | cellular_component | pICln-Sm protein complex |
| N | 0120114 | cellular_component | Sm-like protein family complex |
| N | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE URI J 9001 |
| Chain | Residue |
| I | U9002 |
| J | HIS46 |
| J | ASN48 |
| J | ARG72 |
| J | GLY73 |
| J | ASP74 |
| K | ARG72 |
| K | U9014 |
| site_id | AC2 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE U I 9002 |
| Chain | Residue |
| H | MET47 |
| H | U9003 |
| I | HIS46 |
| I | ASN48 |
| I | ARG72 |
| I | ASP74 |
| I | HOH9012 |
| J | ARG72 |
| J | URI9001 |
| H | HIS46 |
| site_id | AC3 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE U H 9003 |
| Chain | Residue |
| H | HIS46 |
| H | ASN48 |
| H | ARG72 |
| H | GLY73 |
| H | ASP74 |
| I | ARG72 |
| I | U9002 |
| N | LEU15 |
| N | LEU45 |
| N | HIS46 |
| N | MET47 |
| N | U9013 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE URI M 9004 |
| Chain | Residue |
| L | MET47 |
| L | URI9005 |
| M | ASN48 |
| M | ARG72 |
| M | GLY73 |
| M | ASP74 |
| N | U9013 |
| site_id | AC5 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE URI L 9005 |
| Chain | Residue |
| K | MET47 |
| K | U9014 |
| L | HIS46 |
| L | ASN48 |
| L | ARG72 |
| L | GLY73 |
| L | ASP74 |
| L | HOH9010 |
| M | ARG72 |
| M | URI9004 |
| site_id | AC6 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE URI E 9006 |
| Chain | Residue |
| D | MET47 |
| D | U9008 |
| E | HIS46 |
| E | ASN48 |
| E | ARG72 |
| E | GLY73 |
| E | ASP74 |
| E | HOH9020 |
| F | ARG72 |
| F | URI9009 |
| site_id | AC7 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE URI B 9007 |
| Chain | Residue |
| A | LEU45 |
| A | MET47 |
| A | U9010 |
| B | HIS46 |
| B | ASN48 |
| B | ARG72 |
| B | GLY73 |
| B | ASP74 |
| C | URI9011 |
| site_id | AC8 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE U D 9008 |
| Chain | Residue |
| C | LEU45 |
| C | MET47 |
| C | URI9011 |
| D | HIS46 |
| D | ASN48 |
| D | ARG72 |
| D | GLY73 |
| D | ASP74 |
| D | HOH9023 |
| E | ARG72 |
| E | URI9006 |
| site_id | AC9 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE URI F 9009 |
| Chain | Residue |
| E | LEU45 |
| E | MET47 |
| E | URI9006 |
| F | HIS46 |
| F | ASN48 |
| F | ARG72 |
| F | GLY73 |
| F | ASP74 |
| G | ARG72 |
| G | URI9012 |
| site_id | BC1 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE U A 9010 |
| Chain | Residue |
| A | HIS46 |
| A | ASN48 |
| A | ARG72 |
| A | GLY73 |
| A | ASP74 |
| B | ARG72 |
| B | URI9007 |
| G | LEU15 |
| G | HOH9028 |
| site_id | BC2 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE URI C 9011 |
| Chain | Residue |
| C | ARG72 |
| C | GLY73 |
| C | ASP74 |
| C | HOH9034 |
| D | ARG72 |
| D | U9008 |
| B | MET47 |
| B | URI9007 |
| C | ASN48 |
| site_id | BC3 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE URI G 9012 |
| Chain | Residue |
| F | LEU45 |
| F | MET47 |
| F | URI9009 |
| G | HIS46 |
| G | ASN48 |
| G | ARG72 |
| G | GLY73 |
| G | ASP74 |
| G | HOH9035 |
| G | HOH9046 |
| site_id | BC4 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE U N 9013 |
| Chain | Residue |
| H | ARG72 |
| H | U9003 |
| M | HIS46 |
| M | MET47 |
| M | URI9004 |
| N | HIS46 |
| N | ASN48 |
| N | ARG72 |
| N | GLY73 |
| N | ASP74 |
| N | HOH9034 |
| site_id | BC5 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE U K 9014 |
| Chain | Residue |
| J | LEU45 |
| J | HIS46 |
| J | MET47 |
| J | URI9001 |
| K | HIS46 |
| K | ASN48 |
| K | ARG72 |
| K | GLY73 |
| K | ASP74 |
| K | HOH9026 |
| L | ARG72 |
| L | URI9005 |
| site_id | BC6 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE MPD J 7001 |
| Chain | Residue |
| J | ALA17 |
| J | LEU18 |
| J | SER21 |
| J | ILE79 |
| J | ARG81 |
| J | HOH9008 |
| J | HOH9009 |
| J | HOH9010 |
| K | THR68 |
| site_id | BC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MPD K 7002 |
| Chain | Residue |
| K | ALA17 |
| K | LEU18 |
| K | SER21 |
| K | ARG81 |
| site_id | BC8 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE MPD L 7003 |
| Chain | Residue |
| L | ALA17 |
| L | LEU18 |
| L | SER21 |
| L | ILE79 |
| L | SER80 |
| L | ARG81 |
| M | THR68 |
| M | VAL69 |
| site_id | BC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MPD D 7004 |
| Chain | Residue |
| D | ALA17 |
| D | LEU18 |
| D | SER21 |
| D | ILE79 |
| D | ARG81 |
| D | HOH9018 |
| site_id | CC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MPD A 7005 |
| Chain | Residue |
| A | ALA17 |
| A | SER21 |
| A | ILE79 |
| A | ARG81 |
| A | HOH9032 |
| site_id | CC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE MPD C 7006 |
| Chain | Residue |
| C | ALA17 |
| C | SER21 |
| C | ILE79 |
| C | ARG81 |
| C | HOH9016 |
| C | HOH9026 |
| D | THR68 |
| site_id | CC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MPD G 7007 |
| Chain | Residue |
| A | THR68 |
| G | ALA17 |
| G | LEU18 |
| G | SER21 |
| site_id | CC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MPD H 7008 |
| Chain | Residue |
| H | ALA17 |
| H | LEU18 |
| H | SER21 |
| H | ARG81 |
| I | THR68 |
| site_id | CC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MPD N 7009 |
| Chain | Residue |
| H | THR68 |
| N | ALA17 |
| N | LEU18 |
| N | SER21 |
| site_id | CC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MPD M 7010 |
| Chain | Residue |
| M | ALA17 |
| M | LEU18 |
| M | SER21 |
| M | ILE79 |
| M | ARG81 |
| N | THR68 |
| site_id | CC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MPD B 7011 |
| Chain | Residue |
| B | ALA17 |
| B | LEU18 |
| B | SER21 |
| B | SER80 |
| B | ARG81 |
| C | THR68 |
| site_id | CC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MPD E 7012 |
| Chain | Residue |
| E | ALA17 |
| E | SER21 |
| F | VAL50 |
| F | THR68 |
| site_id | CC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MPD F 7013 |
| Chain | Residue |
| F | SER21 |
| F | ILE79 |
| F | ARG81 |
| F | HOH9013 |
| G | VAL50 |
| site_id | DC1 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE MPD I 7014 |
| Chain | Residue |
| I | ALA17 |
| I | LEU18 |
| I | SER21 |
| I | ILE79 |
| I | SER80 |
| I | ARG81 |
| J | THR68 |
