1KNO
CRYSTAL STRUCTURE OF THE COMPLEX OF A CATALYTIC ANTIBODY FAB WITH A TRANSITION STATE ANALOG: STRUCTURAL SIMILARITIES IN ESTERASE-LIKE ABZYMES
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E | IGG2A FAB FRAGMENT CNJ206 | polymer | 214 | 23574.9 | 3 | GenBank (12002892) Pfam (PF07654) UniProt (by SIFTS) (P01837) In PDB | Mus musculus (house mouse) | |
2 | B, D, F | IGG2A FAB FRAGMENT CNJ206 | polymer | 220 | 23426.2 | 3 | GenBank (4091056) Pfam (PF07654) UniProt (by SIFTS) (P01863) In PDB | Mus musculus (house mouse) | |
3 | A | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
4 | B, D, F | METHYL-PHOSPHONIC ACID MONO-(4-NITRO-PHENYL) ESTER | non-polymer | 217.1 | 3 | Chemie (PNP) |
Sequence modifications
A, C, E: 4 - 214 (GenBank: 12002892)
B, D, F: 1 - 235 (GenBank: 4091056)
PDB | External Database | Details |
---|---|---|
Glu 28 | Asp 28 | CONFLICT |
Ser 30 | Gly 30 | CONFLICT |
Gly 31 | Val 31 | CONFLICT |
Tyr 32 | Ser 32 | CONFLICT |
Ser 34 | Asn 34 | CONFLICT |
Lys 39 | Glu 39 | CONFLICT |
Ala 50 | Gly 50 | CONFLICT |
Ala 51 | Thr 51 | CONFLICT |
Thr 53 | Arg 53 | CONFLICT |
Ala 84 | Val 84 | CONFLICT |
Tyr 96 | Pro 96 | CONFLICT |
Gly 99 | - | INSERTION |
Thr 102 | Ser 101 | CONFLICT |
Lys 103 | Ala 102 | CONFLICT |
Leu 104 | Pro 103 | CONFLICT |
Glu 105 | Ser 104 | CONFLICT |
Ile 106 | Cys 105 | CONFLICT |
Leu 107 | Lys 106 | CONFLICT |
- | Val 116 | DELETION |
PDB | External Database | Details |
---|---|---|
Gln 13 | Lys 13 | CONFLICT |
Arg 18 | Leu 18 | CONFLICT |
Ser 30 | Arg 30 | CONFLICT |
Phe 32 | His 32 | CONFLICT |
Gly 33 | Ala 33 | CONFLICT |
His 35 | Ser 35 | CONFLICT |
Ala 40 | Ser 40 | CONFLICT |
Gly 44 | Arg 44 | CONFLICT |
Tyr 50 | Glu 50 | CONFLICT |
- | Asn 52 | DELETION |
Ser 52 | Thr 53 | CONFLICT |
Ser 55 | Thr 56 | CONFLICT |
Ser 56 | Tyr 57 | CONFLICT |
Ile 58 | - | INSERTION |
Tyr 59 | Phe 59 | CONFLICT |
Ala 61 | Ser 61 | CONFLICT |
Lys 65 | Thr 65 | CONFLICT |
Pro 75 | Ala 75 | CONFLICT |
Phe 80 | Tyr 80 | CONFLICT |
Gln 82 | Glu 82 | CONFLICT |
Thr 84 | Ser 84 | CONFLICT |
Gly 99 | - | INSERTION |
Tyr 101 | Gly 100 | CONFLICT |
Tyr 102 | Ser 101 | CONFLICT |
Gly 103 | Ser 102 | CONFLICT |
Arg 105 | Ser 104 | CONFLICT |
Gly 106 | Phe 105 | CONFLICT |
Ala 107 | Val 106 | CONFLICT |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 141003.6 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 716.8 | |
All* | Total formula weight | 141720.3 |