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1GKD

MMP9 active site mutant-inhibitor complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
92 KDA TYPE IV COLLAGENASEpolymer16318383.42UniProt (P14780)
Pfam (PF00413)
HOMO SAPIENS (HUMAN)MMP-9,92 KDA GELATINASE, GELATINASE B, MATRIX METALLOPROTEINASE-9
2C, D, E, F, K...
(A, B)
CALCIUM IONnon-polymer40.18Chemie (CA)
3G, O
(A, B)
2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACIDnon-polymer189.22Chemie (STN)
4H, P
(A, B)
2-AMINO-N,3,3-TRIMETHYLBUTANAMIDEnon-polymer144.22Chemie (BUM)
5I, J, Q, R
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
6S, T
(A, B)
waterwater18.0184Chemie (HOH)
Sequence modifications
A, B: 106 - 106 (PDB: 1GKD)
A, B: 107 - 215 (UniProt: P14780)
A, B: 391 - 443 (UniProt: P14780)
PDBExternal DatabaseDetails
Gln 402Glu 402engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight36766.8
Non-Polymers*Number of molecules16
Total formula weight1249.1
All*Total formula weight38016.0
*Water molecules are not included.

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PDB entries from 2025-06-18

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