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1EK0

GPPNHP-BOUND YPT51 AT 1.48 A RESOLUTION

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
PROTEIN (GTP-BINDING PROTEIN YPT51)polymer17018963.71UniProt (P36017)
Pfam (PF00071)
Saccharomyces cerevisiae (baker's yeast)
2B
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
PubChem (888)
3C
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
PubChem (934)
4D
(A)
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.21Chemie (GNP)
5E
(A)
GUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
PubChem (136073927)
PubChem (135398619)
PubChem (135402030)
PubChem (135431654)
PubChem (135566337)
PubChem (135760556)
PubChem (136026707)
PubChem (136053418)
PubChem (136663964)
PubChem (136664748)
PubChem (136759848)
PubChem (136759849)
PubChem (136759850)
PubChem (136836636)
PubChem (136847074)
PubChem (172898537)
6F
(A)
waterwater18.0209Chemie (HOH)
Sequence modifications
A: 5 - 174 (UniProt: P36017)
PDBExternal DatabaseDetails
Mho 75Met 75modified residue
Mho 124Met 124modified residue
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight18963.7
Non-Polymers*Number of molecules4
Total formula weight1048.4
All*Total formula weight20012.1
*Water molecules are not included.

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PDB entries from 2026-05-13

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